Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MTND1P17-201ENST00000448961 204 ntBASIC4.19□□□□□ -1.74
MSX2P35548 ABCF2P2-201ENST00000450549 296 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 AC004801.2-202ENST00000463559 283 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AL135752.1-201ENST00000479477 471 ntBASIC4.19□□□□□ -1.74
MSX2P35548 RPL21P93-201ENST00000480465 489 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC108145.1-201ENST00000503770 153 ntBASIC4.19□□□□□ -1.74
MSX2P35548 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 AC025554.1-201ENST00000505641 188 ntBASIC4.19□□□□□ -1.74
MSX2P35548 MTCYBP40-201ENST00000509390 1135 ntBASIC4.19□□□□□ -1.74
MSX2P35548 RPL39P5-202ENST00000512505 151 ntBASIC4.19□□□□□ -1.74
MSX2P35548 RNU6-27P-201ENST00000516146 107 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 OR11H5P-201ENST00000554039 926 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.19□□□□□ -1.74
MSX2P35548 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 AC006006.1-201ENST00000603082 144 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC012443.1-201ENST00000605605 231 ntBASIC4.19□□□□□ -1.74
MSX2P35548 MIR432-201ENST00000606207 94 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC100827.5-201ENST00000615883 426 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AL357559.1-201ENST00000622228 274 ntBASIC4.19□□□□□ -1.74
MSX2P35548 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.18□□□□□ -1.74
MSX2P35548 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX2P35548 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX2P35548 RNA5SP123-201ENST00000363244 119 ntBASIC4.18□□□□□ -1.74
MSX2P35548 Y_RNA.148-201ENST00000363557 117 ntBASIC4.18□□□□□ -1.74
MSX2P35548 MIR568-201ENST00000385036 95 ntBASIC4.18□□□□□ -1.74
MSX2P35548 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
MSX2P35548 SNORD66.1-201ENST00000391230 76 ntBASIC4.18□□□□□ -1.74
MSX2P35548 SOD2P1-201ENST00000396543 562 ntBASIC4.18□□□□□ -1.74
MSX2P35548 Z98745.1-201ENST00000402553 494 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AL139397.2-201ENST00000404529 772 ntBASIC4.18□□□□□ -1.74
MSX2P35548 RNA5SP306-201ENST00000411087 107 ntBASIC4.18□□□□□ -1.74
MSX2P35548 RNA5SP107-201ENST00000411358 122 ntBASIC4.18□□□□□ -1.74
MSX2P35548 POLHP1-201ENST00000411806 470 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AC093162.1-201ENST00000419682 124 ntBASIC4.18□□□□□ -1.74
MSX2P35548 RPL7P46-201ENST00000425129 740 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX2P35548 SNRPEP4-201ENST00000435815 279 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AF228730.2-201ENST00000438784 848 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX2P35548 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 AL451050.1-201ENST00000450126 415 ntBASIC4.18□□□□□ -1.74
MSX2P35548 MTCO3P10-201ENST00000455912 772 ntBASIC4.18□□□□□ -1.74
MSX2P35548 RPL36AP13-201ENST00000457490 317 ntBASIC4.18□□□□□ -1.74
MSX2P35548 Y_RNA.653-201ENST00000459091 95 ntBASIC4.18□□□□□ -1.74
MSX2P35548 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.18□□□□□ -1.74
MSX2P35548 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 RNU6-988P-201ENST00000519081 107 ntBASIC4.18□□□□□ -1.74
MSX2P35548 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.18□□□□□ -1.74
MSX2P35548 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.18□□□□□ -1.74
MSX2P35548 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.18□□□□□ -1.74
MSX2P35548 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.18□□□□□ -1.74
MSX2P35548 MIR4503-201ENST00000582187 83 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AF038458.1-201ENST00000588406 262 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AC023043.2-201ENST00000589678 1026 ntBASIC4.18□□□□□ -1.74
MSX2P35548 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.18□□□□□ -1.74
MSX2P35548 AC092747.3-201ENST00000603769 301 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AL451044.1-201ENST00000604867 238 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AC098657.3-201ENST00000620434 263 ntBASIC4.18□□□□□ -1.74
MSX2P35548 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AP001784.1-201ENST00000624107 428 ntBASIC4.18□□□□□ -1.74
MSX2P35548 AC008013.2-202ENST00000637965 364 ntBASIC4.18□□□□□ -1.74
MSX2P35548 OR52H1-202ENST00000641796 1061 ntBASIC4.18□□□□□ -1.74
MSX2P35548 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 MTND5P10-201ENST00000603719 1809 ntBASIC4.18□□□□□ -1.74
MSX2P35548 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
MSX2P35548 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
MSX2P35548 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
MSX2P35548 MTND4P1-201ENST00000457501 1466 ntBASIC4.18□□□□□ -1.74
MSX2P35548 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 MTND5P19-201ENST00000424872 1794 ntBASIC4.17□□□□□ -1.74
MSX2P35548 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 RNU6-960P-201ENST00000364056 120 ntBASIC4.17□□□□□ -1.74
MSX2P35548 RNVU1-3-201ENST00000364313 161 ntBASIC4.17□□□□□ -1.74
MSX2P35548 RNU6-1078P-201ENST00000364522 103 ntBASIC4.17□□□□□ -1.74
MSX2P35548 SNORD51-201ENST00000384320 80 ntBASIC4.17□□□□□ -1.74
MSX2P35548 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms