Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL132857.1-201ENST00000555180 708 ntBASIC2.31□□□□□ -2.04
USF1P22415 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 AL132657.2-201ENST00000564417 358 ntBASIC2.31□□□□□ -2.04
USF1P22415 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.31□□□□□ -2.04
USF1P22415 AC104984.5-201ENST00000586878 94 ntBASIC2.31□□□□□ -2.04
USF1P22415 AC104763.3-201ENST00000613765 618 ntBASIC2.31□□□□□ -2.04
USF1P22415 AC140725.3-201ENST00000616193 880 ntBASIC2.31□□□□□ -2.04
USF1P22415 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.31□□□□□ -2.04
USF1P22415 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.31□□□□□ -2.04
USF1P22415 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
USF1P22415 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.3□□□□□ -2.04
USF1P22415 AC007785.2-201ENST00000598627 1916 ntBASIC2.3□□□□□ -2.04
USF1P22415 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.3□□□□□ -2.04
USF1P22415 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 RNA5SP393-201ENST00000363423 117 ntBASIC2.3□□□□□ -2.04
USF1P22415 RNU1-112P-201ENST00000364401 164 ntBASIC2.3□□□□□ -2.04
USF1P22415 RNU6-359P-201ENST00000365466 108 ntBASIC2.3□□□□□ -2.04
USF1P22415 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.3□□□□□ -2.04
USF1P22415 AL590084.1-201ENST00000407885 387 ntBASIC2.3□□□□□ -2.04
USF1P22415 RPL7P37-201ENST00000425095 738 ntBASIC2.3□□□□□ -2.04
USF1P22415 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC2.3□□□□□ -2.04
USF1P22415 AC112653.1-201ENST00000443851 386 ntBASIC2.3□□□□□ -2.04
USF1P22415 RPL7P36-201ENST00000444633 681 ntBASIC2.3□□□□□ -2.04
USF1P22415 AL513328.1-201ENST00000446460 224 ntBASIC2.3□□□□□ -2.04
USF1P22415 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 RNU7-23P-201ENST00000459465 62 ntBASIC2.3□□□□□ -2.04
USF1P22415 AC097493.1-201ENST00000463958 372 ntBASIC2.3□□□□□ -2.04
USF1P22415 TRBV12-1-201ENST00000479785 344 ntBASIC2.3□□□□□ -2.04
USF1P22415 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC2.3□□□□□ -2.04
USF1P22415 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC2.3□□□□□ -2.04
USF1P22415 AC128657.1-201ENST00000549459 145 ntBASIC2.3□□□□□ -2.04
USF1P22415 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.3□□□□□ -2.04
USF1P22415 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.3□□□□□ -2.04
USF1P22415 AC090888.1-201ENST00000561335 1141 ntBASIC2.3□□□□□ -2.04
USF1P22415 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 AC068135.2-201ENST00000569293 1028 ntBASIC2.3□□□□□ -2.04
USF1P22415 MIR5194-201ENST00000582634 120 ntBASIC2.3□□□□□ -2.04
USF1P22415 VN1R83P-201ENST00000595685 445 ntBASIC2.3□□□□□ -2.04
USF1P22415 AL136363.1-201ENST00000605349 337 ntBASIC2.3□□□□□ -2.04
USF1P22415 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.3□□□□□ -2.04
USF1P22415 AC231657.1-201ENST00000624313 397 ntBASIC2.3□□□□□ -2.04
USF1P22415 ASNSP3-201ENST00000451989 1306 ntBASIC2.3□□□□□ -2.04
USF1P22415 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USF1P22415 AL022578.1-201ENST00000439330 1433 ntBASIC2.3□□□□□ -2.04
USF1P22415 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
USF1P22415 AC026241.1-201ENST00000517873 2142 ntBASIC2.3□□□□□ -2.04
USF1P22415 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
USF1P22415 AC022336.2-201ENST00000568966 2538 ntBASIC2.29□□□□□ -2.04
USF1P22415 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USF1P22415 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.29□□□□□ -2.04
USF1P22415 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USF1P22415 MIR26A1-201ENST00000362205 77 ntBASIC2.29□□□□□ -2.04
USF1P22415 RNU5E-8P-201ENST00000363502 116 ntBASIC2.29□□□□□ -2.04
USF1P22415 Y_RNA.548-201ENST00000384656 105 ntBASIC2.29□□□□□ -2.04
USF1P22415 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
USF1P22415 RNU6-952P-201ENST00000391164 108 ntBASIC2.29□□□□□ -2.04
USF1P22415 RSL24D1P4-201ENST00000400938 484 ntBASIC2.29□□□□□ -2.04
USF1P22415 RNU6-193P-201ENST00000410977 107 ntBASIC2.29□□□□□ -2.04
USF1P22415 TIMM9P2-201ENST00000419324 266 ntBASIC2.29□□□□□ -2.04
USF1P22415 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.29□□□□□ -2.04
USF1P22415 AC008850.1-201ENST00000427546 362 ntBASIC2.29□□□□□ -2.04
USF1P22415 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 OR4K11P-201ENST00000431829 904 ntBASIC2.29□□□□□ -2.04
USF1P22415 RPS29P6-201ENST00000438196 145 ntBASIC2.29□□□□□ -2.04
USF1P22415 BMI1P1-201ENST00000445879 941 ntBASIC2.29□□□□□ -2.04
USF1P22415 MTCO2P25-201ENST00000447065 681 ntBASIC2.29□□□□□ -2.04
USF1P22415 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 AC103975.1-201ENST00000482506 483 ntBASIC2.29□□□□□ -2.04
USF1P22415 SNORA31.15-201ENST00000516771 132 ntBASIC2.29□□□□□ -2.04
USF1P22415 RNU6-714P-201ENST00000516963 103 ntBASIC2.29□□□□□ -2.04
USF1P22415 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.29□□□□□ -2.04
USF1P22415 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.29□□□□□ -2.04
USF1P22415 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.29□□□□□ -2.04
USF1P22415 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
USF1P22415 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 RPL23AP84-201ENST00000571193 464 ntBASIC2.29□□□□□ -2.04
USF1P22415 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 MIR3605-201ENST00000583214 100 ntBASIC2.29□□□□□ -2.04
USF1P22415 ZNF861P-201ENST00000588126 639 ntBASIC2.29□□□□□ -2.04
USF1P22415 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.29□□□□□ -2.04
USF1P22415 AL606834.3-201ENST00000602615 496 ntBASIC2.29□□□□□ -2.04
USF1P22415 AP000787.2-201ENST00000604432 568 ntBASIC2.29□□□□□ -2.04
USF1P22415 AC008277.2-201ENST00000605196 797 ntBASIC2.29□□□□□ -2.04
USF1P22415 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.29□□□□□ -2.04
USF1P22415 AL161734.1-201ENST00000609720 557 ntBASIC2.29□□□□□ -2.04
USF1P22415 AL158163.2-201ENST00000619110 700 ntBASIC2.29□□□□□ -2.04
USF1P22415 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.29□□□□□ -2.04
USF1P22415 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.29□□□□□ -2.04
USF1P22415 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USF1P22415 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
USF1P22415 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USF1P22415 AC006378.2-201ENST00000623178 2476 ntBASIC2.28□□□□□ -2.04
USF1P22415 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms