Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC097713.2-201ENST00000430199 356 ntBASIC3.31□□□□□ -1.88
MSH3P20585 VDAC1P3-201ENST00000434069 851 ntBASIC3.31□□□□□ -1.88
MSH3P20585 MTND4LP10-201ENST00000435146 291 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.31□□□□□ -1.88
MSH3P20585 AL049734.2-201ENST00000441066 616 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.31□□□□□ -1.88
MSH3P20585 snoU13.24-201ENST00000458998 104 ntBASIC3.31□□□□□ -1.88
MSH3P20585 KLF3P2-201ENST00000465138 268 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC010285.1-201ENST00000470580 392 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AP002884.2-201ENST00000471647 395 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.31□□□□□ -1.88
MSH3P20585 AC010265.1-201ENST00000513509 211 ntBASIC3.31□□□□□ -1.88
MSH3P20585 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH3P20585 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH3P20585 SNORA31.20-201ENST00000517111 133 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC022616.6-201ENST00000520479 119 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AP003181.2-201ENST00000528941 181 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH3P20585 AC123904.2-201ENST00000548059 300 ntBASIC3.31□□□□□ -1.88
MSH3P20585 CR383656.7-201ENST00000548164 174 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH3P20585 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.31□□□□□ -1.88
MSH3P20585 AC137800.2-201ENST00000574375 120 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC060771.1-201ENST00000582031 164 ntBASIC3.31□□□□□ -1.88
MSH3P20585 CKS1BP3-201ENST00000600888 237 ntBASIC3.31□□□□□ -1.88
MSH3P20585 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH3P20585 AC073648.5-201ENST00000603502 305 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC011468.4-201ENST00000603942 409 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AL162713.1-201ENST00000604480 262 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC004492.1-201ENST00000607036 742 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC011816.2-201ENST00000607089 556 ntBASIC3.31□□□□□ -1.88
MSH3P20585 RNU6-87P-201ENST00000607561 108 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC098614.4-201ENST00000607601 462 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AL355472.4-201ENST00000610233 626 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AL590282.1-201ENST00000610379 1136 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC091304.9-201ENST00000612091 226 ntBASIC3.31□□□□□ -1.88
MSH3P20585 AC008498.1-201ENST00000613012 531 ntBASIC3.31□□□□□ -1.88
MSH3P20585 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.31□□□□□ -1.88
MSH3P20585 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH3P20585 AC073476.4-201ENST00000628409 72 ntBASIC3.31□□□□□ -1.88
MSH3P20585 Z83843.1-201ENST00000604070 3685 ntBASIC3.31□□□□□ -1.88
MSH3P20585 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSH3P20585 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSH3P20585 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.31□□□□□ -1.88
MSH3P20585 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
MSH3P20585 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH3P20585 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH3P20585 Y_RNA.3-201ENST00000362331 103 ntBASIC3.3□□□□□ -1.88
MSH3P20585 U8.3-201ENST00000363321 132 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RNA5SP72-201ENST00000364442 117 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RNU6-805P-201ENST00000365643 106 ntBASIC3.3□□□□□ -1.88
MSH3P20585 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH3P20585 RNU6-1042P-201ENST00000384204 107 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RNU6-114P-201ENST00000384704 105 ntBASIC3.3□□□□□ -1.88
MSH3P20585 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
MSH3P20585 AC245291.1-201ENST00000419501 328 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH3P20585 AC009961.2-201ENST00000435771 251 ntBASIC3.3□□□□□ -1.88
MSH3P20585 GAPDHP17-201ENST00000449858 1001 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH3P20585 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH3P20585 VN1R17P-201ENST00000472048 1090 ntBASIC3.3□□□□□ -1.88
MSH3P20585 MTND1P3-201ENST00000484956 952 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC055855.1-201ENST00000489563 579 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RPL37P25-201ENST00000507308 276 ntBASIC3.3□□□□□ -1.88
MSH3P20585 SLC25A15P5-201ENST00000508033 253 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH3P20585 RNU6-1095P-201ENST00000516148 108 ntBASIC3.3□□□□□ -1.88
MSH3P20585 SNORA18.6-201ENST00000516792 115 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RNU6-528P-201ENST00000516926 100 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RNU2-46P-201ENST00000517038 113 ntBASIC3.3□□□□□ -1.88
MSH3P20585 RN7SKP289-201ENST00000517244 295 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH3P20585 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH3P20585 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.3□□□□□ -1.88
MSH3P20585 AC037471.2-201ENST00000564941 598 ntBASIC3.3□□□□□ -1.88
MSH3P20585 MIR3913-1-201ENST00000577744 102 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH3P20585 DEFB131E-202ENST00000602581 683 ntBASIC3.3□□□□□ -1.88
MSH3P20585 XIAPP1-201ENST00000603162 600 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC011451.2-201ENST00000604303 598 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AL021997.1-201ENST00000605757 193 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC091834.1-201ENST00000614543 472 ntBASIC3.3□□□□□ -1.88
MSH3P20585 MIR7975-201ENST00000619350 68 ntBASIC3.3□□□□□ -1.88
MSH3P20585 AC010149.2-201ENST00000637608 315 ntBASIC3.3□□□□□ -1.88
MSH3P20585 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH3P20585 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH3P20585 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH3P20585 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH3P20585 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH3P20585 RNA5SP295-201ENST00000362655 121 ntBASIC3.29□□□□□ -1.88
MSH3P20585 RNA5SP383-201ENST00000362934 120 ntBASIC3.29□□□□□ -1.88
MSH3P20585 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
MSH3P20585 RNU6-259P-201ENST00000383999 107 ntBASIC3.29□□□□□ -1.88
MSH3P20585 RNU6-1181P-201ENST00000384191 106 ntBASIC3.29□□□□□ -1.88
MSH3P20585 Y_RNA.582-201ENST00000391023 95 ntBASIC3.29□□□□□ -1.88
MSH3P20585 FCF1P10-201ENST00000407590 479 ntBASIC3.29□□□□□ -1.88
MSH3P20585 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.29□□□□□ -1.88
MSH3P20585 RNU6-712P-201ENST00000410558 100 ntBASIC3.29□□□□□ -1.88
MSH3P20585 RAD23BP2-201ENST00000416003 1207 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms