Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.26□□□□□ -1.57
LIG1P18858 ZNF33CP-201ENST00000432492 2030 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AL391684.1-202ENST00000641293 1636 ntBASIC5.26□□□□□ -1.57
LIG1P18858 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG1P18858 ZNF807-201ENST00000328088 1707 ntBASIC5.26□□□□□ -1.57
LIG1P18858 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
LIG1P18858 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
LIG1P18858 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG1P18858 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG1P18858 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
LIG1P18858 RN7SKP115-201ENST00000363177 317 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RNU6-188P-201ENST00000364207 107 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RNU6-702P-201ENST00000364982 107 ntBASIC5.25□□□□□ -1.57
LIG1P18858 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
LIG1P18858 U3.29-201ENST00000391296 212 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RN7SKP106-201ENST00000410832 272 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RN7SKP100-201ENST00000411258 284 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RNA5SP107-201ENST00000411358 122 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG1P18858 AL160004.2-201ENST00000432935 350 ntBASIC5.25□□□□□ -1.57
LIG1P18858 SNAP23P1-201ENST00000433229 246 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC005154.2-201ENST00000438110 379 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.25□□□□□ -1.57
LIG1P18858 RPL23AP89-201ENST00000439324 255 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC005094.1-201ENST00000440420 368 ntBASIC5.25□□□□□ -1.57
LIG1P18858 Z95327.1-201ENST00000446082 482 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC104058.1-201ENST00000448028 297 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RPS17P13-201ENST00000448974 407 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG1P18858 ZFRP1-201ENST00000457579 2970 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RPL12P20-201ENST00000475538 479 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RPL21P103-201ENST00000479921 488 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG1P18858 SCARNA22-201ENST00000503991 125 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC097473.1-201ENST00000508142 408 ntBASIC5.25□□□□□ -1.57
LIG1P18858 AC008526.1-201ENST00000509149 338 ntBASIC5.25□□□□□ -1.57
LIG1P18858 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.25□□□□□ -1.57
LIG1P18858 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG1P18858 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG1P18858 AC010653.1-201ENST00000571108 881 ntBASIC5.25□□□□□ -1.57
LIG1P18858 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.25□□□□□ -1.57
LIG1P18858 MIR6820-201ENST00000611508 62 ntBASIC5.25□□□□□ -1.57
LIG1P18858 SNX18P1Y-201ENST00000616231 511 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RN7SL722P-201ENST00000617780 284 ntBASIC5.25□□□□□ -1.57
LIG1P18858 RN7SL565P-201ENST00000618246 284 ntBASIC5.25□□□□□ -1.57
LIG1P18858 ZNF519P1-201ENST00000449011 1626 ntBASIC5.25□□□□□ -1.57
LIG1P18858 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LIG1P18858 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LIG1P18858 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
LIG1P18858 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.25□□□□□ -1.57
LIG1P18858 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.25□□□□□ -1.57
LIG1P18858 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG1P18858 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 EIF2AP4-201ENST00000424793 1781 ntBASIC5.24□□□□□ -1.57
LIG1P18858 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.24□□□□□ -1.57
LIG1P18858 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 Y_RNA.252-201ENST00000364556 101 ntBASIC5.24□□□□□ -1.57
LIG1P18858 Y_RNA.557-201ENST00000384680 107 ntBASIC5.24□□□□□ -1.57
LIG1P18858 RNU6-328P-201ENST00000390887 106 ntBASIC5.24□□□□□ -1.57
LIG1P18858 RNU6-550P-201ENST00000391057 101 ntBASIC5.24□□□□□ -1.57
LIG1P18858 MIR298-201ENST00000401212 88 ntBASIC5.24□□□□□ -1.57
LIG1P18858 HMGB3P2-201ENST00000411913 584 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.24□□□□□ -1.57
LIG1P18858 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.24□□□□□ -1.57
LIG1P18858 PDSS1P1-201ENST00000422953 1114 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG1P18858 RPL35AP22-201ENST00000436855 335 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 SNRPGP5-201ENST00000456003 220 ntBASIC5.24□□□□□ -1.57
LIG1P18858 RPS5P7-201ENST00000456664 608 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG1P18858 SCARNA18-201ENST00000459004 134 ntBASIC5.24□□□□□ -1.57
LIG1P18858 MTATP8P1-201ENST00000467115 207 ntBASIC5.24□□□□□ -1.57
LIG1P18858 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
LIG1P18858 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG1P18858 HIGD1AP13-201ENST00000509878 289 ntBASIC5.24□□□□□ -1.57
LIG1P18858 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC016065.2-201ENST00000514530 444 ntBASIC5.24□□□□□ -1.57
LIG1P18858 RNU6-264P-201ENST00000517134 104 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC023442.1-201ENST00000531247 422 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 AL161670.1-201ENST00000554348 137 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC091178.1-203ENST00000584586 279 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC025588.3-201ENST00000604182 274 ntBASIC5.24□□□□□ -1.57
LIG1P18858 MIR6748-201ENST00000610433 71 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG1P18858 PLCE1P1-201ENST00000622094 305 ntBASIC5.24□□□□□ -1.57
LIG1P18858 AL669831.3-213ENST00000636676 183 ntBASIC5.24□□□□□ -1.57
LIG1P18858 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms