Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.72□□□□□ -1.97
SDC1P18827 RPL21P40-201ENST00000428586 483 ntBASIC2.72□□□□□ -1.97
SDC1P18827 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC1P18827 AL139824.2-201ENST00000458731 1095 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC003982.1-202ENST00000469928 248 ntBASIC2.72□□□□□ -1.97
SDC1P18827 RPL21P129-201ENST00000491732 478 ntBASIC2.72□□□□□ -1.97
SDC1P18827 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SDC1P18827 SNORD59.2-201ENST00000516873 68 ntBASIC2.72□□□□□ -1.97
SDC1P18827 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.72□□□□□ -1.97
SDC1P18827 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC1P18827 AC010653.1-201ENST00000571108 881 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC005951.2-201ENST00000576282 495 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AP001004.1-201ENST00000582468 324 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC1P18827 AC006504.3-201ENST00000586818 523 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.72□□□□□ -1.97
SDC1P18827 AL357094.1-201ENST00000603845 844 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC131902.3-201ENST00000611767 581 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC012150.2-201ENST00000621300 544 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC008568.2-201ENST00000623862 2313 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC019226.1-201ENST00000625666 515 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC092192.1-201ENST00000633154 1018 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.72□□□□□ -1.97
SDC1P18827 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SDC1P18827 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.72□□□□□ -1.97
SDC1P18827 CCT4P2-201ENST00000233836 1548 ntBASIC2.72□□□□□ -1.97
SDC1P18827 MTND5P1-201ENST00000445440 1375 ntBASIC2.72□□□□□ -1.97
SDC1P18827 OR4G2P-202ENST00000641004 1759 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
SDC1P18827 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SDC1P18827 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SDC1P18827 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SDC1P18827 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
SDC1P18827 AC096644.4-201ENST00000563417 2912 ntBASIC2.71□□□□□ -1.98
SDC1P18827 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
SDC1P18827 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC1P18827 RNU1-39P-201ENST00000383897 165 ntBASIC2.71□□□□□ -1.98
SDC1P18827 MIR514A1-201ENST00000385133 98 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RNU6-754P-201ENST00000391166 107 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RPS4XP3-201ENST00000398541 413 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RN7SKP27-201ENST00000410684 333 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RNA5SP38-201ENST00000410750 119 ntBASIC2.71□□□□□ -1.98
SDC1P18827 MTND1P21-201ENST00000412991 285 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RPL23AP39-201ENST00000415533 405 ntBASIC2.71□□□□□ -1.98
SDC1P18827 USP9YP36-201ENST00000424581 829 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.71□□□□□ -1.98
SDC1P18827 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.71□□□□□ -1.98
SDC1P18827 AL512649.1-201ENST00000428997 581 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.71□□□□□ -1.98
SDC1P18827 SNRPEP4-201ENST00000435815 279 ntBASIC2.71□□□□□ -1.98
SDC1P18827 UBE2D3P1-201ENST00000436669 444 ntBASIC2.71□□□□□ -1.98
SDC1P18827 LARP1BP3-201ENST00000437229 869 ntBASIC2.71□□□□□ -1.98
SDC1P18827 TRIM60P18-201ENST00000441518 828 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RPL7P36-201ENST00000444633 681 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC1P18827 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC1P18827 AL358232.1-201ENST00000448030 501 ntBASIC2.71□□□□□ -1.98
SDC1P18827 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC1P18827 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC1P18827 AC135721.1-201ENST00000497954 479 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RNA5SP76-201ENST00000516277 87 ntBASIC2.71□□□□□ -1.98
SDC1P18827 RNU6-678P-201ENST00000516832 109 ntBASIC2.71□□□□□ -1.98
SDC1P18827 CASP1P1-201ENST00000526345 212 ntBASIC2.71□□□□□ -1.98
SDC1P18827 MTATP6P15-201ENST00000527233 835 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SDC1P18827 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC1P18827 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC1P18827 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.71□□□□□ -1.98
SDC1P18827 SETP2-201ENST00000553886 926 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AL157394.1-201ENST00000562983 1224 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC011260.1-201ENST00000578420 472 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC012493.2-201ENST00000595083 291 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC1P18827 AC091965.4-201ENST00000607691 587 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC069234.5-201ENST00000611056 416 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC244100.1-202ENST00000621554 382 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC112204.3-201ENST00000623822 332 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AL159972.1-201ENST00000625150 448 ntBASIC2.71□□□□□ -1.98
SDC1P18827 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC1P18827 CUL1P1-201ENST00000509510 2425 ntBASIC2.71□□□□□ -1.98
SDC1P18827 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC1P18827 AC092125.1-201ENST00000562568 1995 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AC092593.1-201ENST00000515413 1815 ntBASIC2.7□□□□□ -1.98
SDC1P18827 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.7□□□□□ -1.98
SDC1P18827 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 RNU6-500P-201ENST00000362349 107 ntBASIC2.7□□□□□ -1.98
SDC1P18827 Y_RNA.97-201ENST00000363094 102 ntBASIC2.7□□□□□ -1.98
SDC1P18827 SNORA23-201ENST00000365128 182 ntBASIC2.7□□□□□ -1.98
SDC1P18827 RNU6-1197P-201ENST00000391183 107 ntBASIC2.7□□□□□ -1.98
SDC1P18827 SAR1AP2-201ENST00000392696 594 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AL354719.1-201ENST00000406535 843 ntBASIC2.7□□□□□ -1.98
SDC1P18827 FAT1P1-201ENST00000406588 507 ntBASIC2.7□□□□□ -1.98
SDC1P18827 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 RNU6-1077P-201ENST00000410506 102 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms