Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.17□□□□□ -1.9
SIX3O95343 RPL23AP41-201ENST00000484754 458 ntBASIC3.17□□□□□ -1.9
SIX3O95343 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX3O95343 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SIX3O95343 IGHV3-76-201ENST00000522465 295 ntBASIC3.17□□□□□ -1.9
SIX3O95343 MTND4LP18-201ENST00000526864 291 ntBASIC3.17□□□□□ -1.9
SIX3O95343 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX3O95343 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.17□□□□□ -1.9
SIX3O95343 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.17□□□□□ -1.9
SIX3O95343 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX3O95343 AL133153.1-201ENST00000557756 303 ntBASIC3.17□□□□□ -1.9
SIX3O95343 HMGB1P6-201ENST00000569046 646 ntBASIC3.17□□□□□ -1.9
SIX3O95343 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX3O95343 AC006504.3-201ENST00000586818 523 ntBASIC3.17□□□□□ -1.9
SIX3O95343 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.17□□□□□ -1.9
SIX3O95343 AP001981.2-201ENST00000603241 418 ntBASIC3.17□□□□□ -1.9
SIX3O95343 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX3O95343 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX3O95343 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SIX3O95343 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.17□□□□□ -1.9
SIX3O95343 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX3O95343 AC006378.2-201ENST00000623178 2476 ntBASIC3.17□□□□□ -1.9
SIX3O95343 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SIX3O95343 AL049641.1-201ENST00000441055 1948 ntBASIC3.17□□□□□ -1.9
SIX3O95343 CCT4P2-201ENST00000233836 1548 ntBASIC3.16□□□□□ -1.9
SIX3O95343 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.16□□□□□ -1.9
SIX3O95343 UBE2V1P2-201ENST00000397758 440 ntBASIC3.16□□□□□ -1.9
SIX3O95343 BTF3L4P3-201ENST00000418879 476 ntBASIC3.16□□□□□ -1.9
SIX3O95343 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.16□□□□□ -1.9
SIX3O95343 OOSP1P1-201ENST00000423265 274 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC012498.1-201ENST00000424037 437 ntBASIC3.16□□□□□ -1.9
SIX3O95343 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.16□□□□□ -1.9
SIX3O95343 ARPC3P1-201ENST00000437218 533 ntBASIC3.16□□□□□ -1.9
SIX3O95343 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX3O95343 DDX3P2-201ENST00000446138 111 ntBASIC3.16□□□□□ -1.9
SIX3O95343 GAPDHP27-201ENST00000447427 1020 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC010099.1-201ENST00000455434 375 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC108059.3-201ENST00000456388 214 ntBASIC3.16□□□□□ -1.9
SIX3O95343 RPS27P29-201ENST00000463110 252 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC006483.1-201ENST00000487308 313 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC114967.1-201ENST00000504890 259 ntBASIC3.16□□□□□ -1.9
SIX3O95343 HSPD1P15-201ENST00000505573 1122 ntBASIC3.16□□□□□ -1.9
SIX3O95343 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.16□□□□□ -1.9
SIX3O95343 CDC42P4-201ENST00000510507 563 ntBASIC3.16□□□□□ -1.9
SIX3O95343 RNA5SP217-201ENST00000515959 91 ntBASIC3.16□□□□□ -1.9
SIX3O95343 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX3O95343 DNAJC8P1-201ENST00000554535 372 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.16□□□□□ -1.9
SIX3O95343 HMGB1P14-201ENST00000557424 591 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC034105.3-201ENST00000565294 442 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX3O95343 GLUD1P4-201ENST00000590914 418 ntBASIC3.16□□□□□ -1.9
SIX3O95343 VN1R90P-201ENST00000595717 726 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC104763.2-201ENST00000604179 382 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX3O95343 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.16□□□□□ -1.9
SIX3O95343 AC140725.3-201ENST00000616193 880 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC091304.6-201ENST00000619761 202 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.16□□□□□ -1.9
SIX3O95343 AL356266.1-201ENST00000623311 483 ntBASIC3.16□□□□□ -1.9
SIX3O95343 AL049781.1-201ENST00000623195 3585 ntBASIC3.16□□□□□ -1.9
SIX3O95343 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.16□□□□□ -1.9
SIX3O95343 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.16□□□□□ -1.9
SIX3O95343 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
SIX3O95343 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
SIX3O95343 AC103988.1-201ENST00000566382 2177 ntBASIC3.15□□□□□ -1.9
SIX3O95343 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
SIX3O95343 FTLP6-201ENST00000355274 422 ntBASIC3.15□□□□□ -1.91
SIX3O95343 RNA5SP139-201ENST00000364340 117 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SIX3O95343 MIR19A-201ENST00000384878 82 ntBASIC3.15□□□□□ -1.91
SIX3O95343 EI24P2-201ENST00000397776 1076 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC063979.1-201ENST00000415539 377 ntBASIC3.15□□□□□ -1.91
SIX3O95343 RPS27AP14-201ENST00000422868 454 ntBASIC3.15□□□□□ -1.91
SIX3O95343 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.15□□□□□ -1.91
SIX3O95343 AL593851.1-201ENST00000426171 157 ntBASIC3.15□□□□□ -1.91
SIX3O95343 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 USP12PX-201ENST00000432383 1057 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 AC093392.2-201ENST00000450682 337 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.15□□□□□ -1.91
SIX3O95343 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SIX3O95343 AC123904.3-201ENST00000547218 814 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC093012.1-202ENST00000549403 582 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.15□□□□□ -1.91
SIX3O95343 EIF4BP1-201ENST00000554881 351 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC009094.1-201ENST00000564443 426 ntBASIC3.15□□□□□ -1.91
SIX3O95343 PCMTD1P2-201ENST00000565017 355 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.15□□□□□ -1.91
SIX3O95343 NUTF2P8-201ENST00000604593 363 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC017037.3-201ENST00000625016 472 ntBASIC3.15□□□□□ -1.91
SIX3O95343 AC097655.1-201ENST00000635075 318 ntBASIC3.15□□□□□ -1.91
SIX3O95343 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.15□□□□□ -1.91
SIX3O95343 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SIX3O95343 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms