Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RPL31P60-201ENST00000478450 367 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC108729.1-201ENST00000487812 947 ntBASIC2.8□□□□□ -1.96
MSH4O15457 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.8□□□□□ -1.96
MSH4O15457 AC021146.8-201ENST00000507455 733 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.8□□□□□ -1.96
MSH4O15457 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.8□□□□□ -1.96
MSH4O15457 RNU6-714P-201ENST00000516963 103 ntBASIC2.8□□□□□ -1.96
MSH4O15457 SNORA31.26-201ENST00000517250 137 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.8□□□□□ -1.96
MSH4O15457 ELOCP31-201ENST00000540463 467 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC125611.2-201ENST00000551907 647 ntBASIC2.8□□□□□ -1.96
MSH4O15457 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.8□□□□□ -1.96
MSH4O15457 MIR3921-201ENST00000577308 85 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC011260.1-201ENST00000578420 472 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AP001429.1-201ENST00000602568 530 ntBASIC2.8□□□□□ -1.96
MSH4O15457 RPP40P2-201ENST00000603596 712 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC106052.1-201ENST00000608029 497 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC002550.2-201ENST00000621246 394 ntBASIC2.8□□□□□ -1.96
MSH4O15457 AC090772.4-201ENST00000623599 362 ntBASIC2.8□□□□□ -1.96
MSH4O15457 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.8□□□□□ -1.96
MSH4O15457 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AC012321.1-201ENST00000561622 1588 ntBASIC2.79□□□□□ -1.96
MSH4O15457 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH4O15457 U8.9-201ENST00000365667 134 ntBASIC2.79□□□□□ -1.96
MSH4O15457 RNU6-906P-201ENST00000384700 70 ntBASIC2.79□□□□□ -1.96
MSH4O15457 SAR1AP2-201ENST00000392696 594 ntBASIC2.79□□□□□ -1.96
MSH4O15457 MTCO2P8-201ENST00000412213 658 ntBASIC2.79□□□□□ -1.96
MSH4O15457 USP9YP33-201ENST00000412220 421 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH4O15457 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH4O15457 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH4O15457 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSH4O15457 USP9YP35-201ENST00000435696 412 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH4O15457 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH4O15457 PTENP1-201ENST00000447117 1215 ntBASIC2.79□□□□□ -1.96
MSH4O15457 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH4O15457 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH4O15457 MEMO1P3-201ENST00000459811 302 ntBASIC2.79□□□□□ -1.96
MSH4O15457 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH4O15457 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.79□□□□□ -1.96
MSH4O15457 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSH4O15457 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH4O15457 BNIP3P39-201ENST00000601077 554 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AC106791.2-201ENST00000604680 391 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AL158211.4-201ENST00000606988 584 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AC008443.7-201ENST00000622195 246 ntBASIC2.79□□□□□ -1.96
MSH4O15457 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH4O15457 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH4O15457 AL359693.1-201ENST00000614959 2407 ntBASIC2.79□□□□□ -1.96
MSH4O15457 AC008568.2-201ENST00000623862 2313 ntBASIC2.79□□□□□ -1.96
MSH4O15457 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH4O15457 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
MSH4O15457 RNU5A-1-201ENST00000362698 116 ntBASIC2.78□□□□□ -1.96
MSH4O15457 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
MSH4O15457 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
MSH4O15457 AL359511.1-201ENST00000402970 211 ntBASIC2.78□□□□□ -1.96
MSH4O15457 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AC106883.1-201ENST00000418805 562 ntBASIC2.78□□□□□ -1.96
MSH4O15457 BX119904.4-201ENST00000424402 301 ntBASIC2.78□□□□□ -1.96
MSH4O15457 ZYG11AP1-201ENST00000430329 837 ntBASIC2.78□□□□□ -1.96
MSH4O15457 OR4K11P-201ENST00000431829 904 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AC090774.1-201ENST00000435925 246 ntBASIC2.78□□□□□ -1.96
MSH4O15457 RPL21P2-201ENST00000440049 481 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 DUXAP8-207ENST00000456786 622 ntBASIC2.78□□□□□ -1.96
MSH4O15457 RPL30P9-201ENST00000465586 330 ntBASIC2.78□□□□□ -1.96
MSH4O15457 RPL23AP45-201ENST00000476406 468 ntBASIC2.78□□□□□ -1.96
MSH4O15457 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH4O15457 AC010587.2-201ENST00000511727 448 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.78□□□□□ -1.96
MSH4O15457 AC239860.2-201ENST00000525886 270 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.78□□□□□ -1.96
MSH4O15457 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AL132857.1-201ENST00000555180 708 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AC090695.1-201ENST00000561269 1222 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AL157394.1-201ENST00000562983 1224 ntBASIC2.78□□□□□ -1.96
MSH4O15457 RPL23AP84-201ENST00000571193 464 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH4O15457 AC022662.1-201ENST00000580252 331 ntBASIC2.78□□□□□ -1.96
MSH4O15457 MTCO2P2-201ENST00000591258 225 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC078899.3-201ENST00000599065 212 ntBASIC2.78□□□□□ -1.96
MSH4O15457 MIR6130-201ENST00000619419 109 ntBASIC2.78□□□□□ -1.96
MSH4O15457 AC006386.1-201ENST00000619436 415 ntBASIC2.78□□□□□ -1.96
MSH4O15457 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH4O15457 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
MSH4O15457 AC007336.1-201ENST00000576365 3828 ntBASIC2.78□□□□□ -1.96
MSH4O15457 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
MSH4O15457 AC005832.2-201ENST00000538921 1430 ntBASIC2.77□□□□□ -1.97
MSH4O15457 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.77□□□□□ -1.97
MSH4O15457 AL161781.1-201ENST00000354277 403 ntBASIC2.77□□□□□ -1.97
MSH4O15457 RNU6-97P-201ENST00000363387 104 ntBASIC2.77□□□□□ -1.97
MSH4O15457 RNA5SP126-201ENST00000365092 109 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms