Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC010655.1-201ENST00000449336 292 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 HMGB3P16-201ENST00000508037 287 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 MRPS35P2-201ENST00000508242 191 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 SNORA14.1-201ENST00000516113 141 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AC009812.2-201ENST00000517657 457 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 IGKV2D-36-201ENST00000518643 226 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 HMGB1P24-202ENST00000615653 685 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AC126323.6-202ENST00000568092 3511 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AL031119.1-201ENST00000404707 1879 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AC010300.1-201ENST00000600671 5134 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC108751.5-201ENST00000492880 1336 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 OR14L1P-202ENST00000641545 3009 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 XIAPP3-201ENST00000312918 795 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 Y_RNA.80-201ENST00000362996 102 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 RNU4-44P-201ENST00000363050 141 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 Y_RNA.307-201ENST00000365022 117 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 Y_RNA.485-201ENST00000384395 102 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-306P-201ENST00000384617 107 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 MIR129-1-201ENST00000384972 72 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 ENSAP1-201ENST00000392855 326 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 U3.35-201ENST00000408405 208 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 RPLP0P7-201ENST00000416050 667 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 RPL30P3-201ENST00000424262 333 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 EIF4HP2-201ENST00000424380 563 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 RPL18P10-201ENST00000425606 538 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AL353597.2-202ENST00000434901 373 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC239809.1-201ENST00000450470 217 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC007016.1-201ENST00000512110 244 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 MTCO1P24-201ENST00000515438 1558 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC009643.1-201ENST00000532030 391 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC026470.2-201ENST00000561492 181 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC104118.1-201ENST00000607625 1589 ntBASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP3Q9Y3E7 AC005592.1-201ENST00000566527 1640 ntBASIC5.77□□□□□ -1.48
CHMP3Q9Y3E7 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.48
CHMP3Q9Y3E7 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AC021146.4-201ENST00000309229 279 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 Y_RNA.389-201ENST00000383924 113 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-637P-201ENST00000384050 107 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 RPS26P47-201ENST00000427219 348 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 RPL35AP22-201ENST00000436855 335 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AL162591.2-201ENST00000449634 317 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 PPIAP3-201ENST00000450588 505 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 FABP5P13-201ENST00000452144 328 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 RN7SL432P-201ENST00000484057 298 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AP001086.1-201ENST00000494882 321 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 SCARNA16.2-201ENST00000516520 172 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 RNA5SP384-201ENST00000516615 116 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 RNU1-54P-201ENST00000517181 120 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AP005902.1-201ENST00000521358 186 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 SETP7-201ENST00000552169 453 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 MIR3941-201ENST00000582572 103 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 AL158032.1-201ENST00000605401 106 ntBASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP3Q9Y3E7 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AC091812.1-201ENST00000432235 1948 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-1284P-201ENST00000363701 100 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNA5SP447-201ENST00000363749 119 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-99P-201ENST00000364721 107 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AP000580.1-201ENST00000404439 358 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AL583834.1-201ENST00000406943 343 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNU2-3P-201ENST00000410144 191 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-603P-201ENST00000411403 107 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms