Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.57□□□□□ -1.84
LIMA1Q9UHB6 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 ZNF807-201ENST00000328088 1707 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 RNU4-91P-201ENST00000364778 135 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SNORD116-9-201ENST00000384000 95 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SNORD116-3-201ENST00000384287 95 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SNORD116-7-201ENST00000384404 95 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SNORD116-5-201ENST00000384462 95 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MIR514A1-201ENST00000385133 98 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 FCF1P10-201ENST00000407590 479 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 RN7SKP142-201ENST00000411236 328 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 RPL21P24-201ENST00000413752 448 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 RPL7L1P10-201ENST00000427790 463 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 RNA5SP269-201ENST00000459032 137 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 RPL31P60-201ENST00000478450 367 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MTND5P13-201ENST00000513046 1079 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AL157394.1-201ENST00000562983 1224 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AL591516.1-201ENST00000611326 274 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC245517.5-201ENST00000611529 162 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AL390240.1-201ENST00000612950 384 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 AC004696.1-201ENST00000614345 607 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 OR4G2P-202ENST00000641004 1759 ntBASIC3.56□□□□□ -1.84
LIMA1Q9UHB6 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC008568.2-201ENST00000623862 2313 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 RNU6-278P-201ENST00000390945 109 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 RPL21P3-201ENST00000395517 478 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 TXNP7-201ENST00000406296 293 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC007390.1-201ENST00000415722 356 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 HSPD1P21-201ENST00000436541 245 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC005094.1-201ENST00000440420 368 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 RPL17P49-201ENST00000443728 411 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 TAF9P1-201ENST00000445421 515 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 TAF9P2-201ENST00000454958 515 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC146507.2-201ENST00000460608 476 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC068724.1-201ENST00000487100 792 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 PAICSP4-201ENST00000517543 1253 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC107934.1-201ENST00000522215 217 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 OR5B10P-201ENST00000532869 642 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC106785.1-201ENST00000565935 262 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 BNIP3P8-201ENST00000597863 560 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 KC877982.1-201ENST00000602313 470 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AL606834.2-201ENST00000602954 668 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC135507.1-201ENST00000607214 561 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC103710.1-201ENST00000610003 901 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC091953.2-201ENST00000623979 160 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AL136313.1-201ENST00000624804 202 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 AC090740.1-201ENST00000623193 2262 ntBASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LIMA1Q9UHB6 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms