Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC103996.1-201ENST00000555468 102 ntBASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 MIR4458-201ENST00000578872 75 ntBASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 AL360012.1-201ENST00000602813 131 ntBASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 SRGNP1-201ENST00000603392 451 ntBASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 AC099669.2-201ENST00000616549 437 ntBASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 U6.92-201ENST00000636464 89 ntBASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
LIMD1Q9UGP4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 RNU6-1266P-201ENST00000362794 105 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 RNU6-227P-201ENST00000362865 103 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 MIR141-201ENST00000384975 95 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 RNA5SP339-201ENST00000390987 122 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 NDUFB4P10-201ENST00000452541 359 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 RPS29P22-201ENST00000472363 168 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 DUTP1-201ENST00000493631 470 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 SCARNA15.2-201ENST00000516409 127 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 AP002770.2-201ENST00000543613 532 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 MIR3921-201ENST00000577308 85 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 FAM60BP-201ENST00000578364 658 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 AL360181.4-201ENST00000621752 134 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 LINC01963-201ENST00000562038 3148 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 ASNSP1-201ENST00000518311 1939 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 AC022893.2-201ENST00000564832 3296 ntBASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
LIMD1Q9UGP4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AP001148.1-201ENST00000624124 2359 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.358-201ENST00000365491 99 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AL139156.1-201ENST00000412785 841 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 FAR2P2-201ENST00000413041 594 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 TMEM167AP1-201ENST00000423409 219 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 TRBV5-2-201ENST00000489095 273 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC010469.2-201ENST00000496412 480 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC108145.1-201ENST00000503770 153 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 CASP1P1-201ENST00000526345 212 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 MIR3934-201ENST00000579806 107 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 RPL23AP78-201ENST00000599928 470 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 RNA5SP108-201ENST00000605921 117 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 FAM25E-202ENST00000608562 189 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC025574.2-201ENST00000615621 514 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC091953.3-201ENST00000623220 236 ntBASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.76□□□□□ -1.49
LIMD1Q9UGP4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.245-201ENST00000364493 95 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 MIR10A-201ENST00000385043 110 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 MIR130A-201ENST00000385274 89 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms