Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MTND4P24-201ENST00000424002 397 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC004022.1-201ENST00000447766 1066 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC015908.1-201ENST00000478739 476 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC090453.1-201ENST00000495560 436 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC011352.3-201ENST00000505162 593 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC007115.1-201ENST00000546853 234 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC090666.1-201ENST00000578241 445 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AC106028.5-201ENST00000610332 395 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AL590396.2-201ENST00000636511 1041 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 RNU4-72P-201ENST00000410754 173 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AL357078.2-201ENST00000416486 427 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 MTCO3P12-201ENST00000416718 547 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC098614.2-201ENST00000426040 255 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC087588.1-201ENST00000462203 316 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 NAP1L1P3-201ENST00000462291 880 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 OR5AQ1P-201ENST00000527596 927 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 GLYCAM1-201ENST00000546596 285 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC024614.2-201ENST00000577584 372 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC090616.3-201ENST00000582184 217 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 BNIP3P8-201ENST00000597863 560 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC017104.5-201ENST00000637647 639 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 DSTNP4-201ENST00000399472 474 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC019129.1-201ENST00000403786 261 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC114973.1-201ENST00000429057 632 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 RPL36P19-201ENST00000430744 301 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 MRPS36P2-201ENST00000512569 299 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 RN7SKP31-201ENST00000516354 278 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 HSPE1P18-201ENST00000517602 280 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 COX6CP5-201ENST00000527162 228 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AL022099.1-201ENST00000604551 712 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.64□□□□□ -2.15
SCN3AQ9NY46 AC130650.2-201ENST00000618736 2403 ntBASIC1.64□□□□□ -2.15
SCN3AQ9NY46 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 ENSAP3-201ENST00000312710 333 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 RNU1-17P-201ENST00000363022 152 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 RNU2-40P-201ENST00000410833 196 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 ARL2BPP3-201ENST00000421226 480 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 IFNA20P-201ENST00000436840 528 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 UBE2V1P13-201ENST00000436983 439 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 RPS20P22-201ENST00000473700 357 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC096751.1-202ENST00000502691 1067 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC113155.1-201ENST00000511141 769 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC104997.1-201ENST00000519761 717 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 MIR3921-201ENST00000577308 85 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 MIR3616-201ENST00000584070 92 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC106900.2-201ENST00000604994 317 ntBASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.63□□□□□ -2.15
SCN3AQ9NY46 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RNU6-444P-201ENST00000383988 108 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 MCTS2P-201ENST00000394552 546 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 Z75741.2-201ENST00000417272 1167 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 HMGN2P38-201ENST00000423806 265 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 147.5 ms