Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC005255.1-201ENST00000593748 216 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AP001330.4-201ENST00000604350 154 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC007390.2-201ENST00000606229 3803 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 U2.17-201ENST00000611454 95 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL355810.1-201ENST00000614629 552 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 MAPK10-303ENST00000641324 3959 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RNA5SP447-201ENST00000363749 119 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.813-201ENST00000364639 102 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.378-201ENST00000365652 113 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.414-201ENST00000384011 101 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RNU6-1011P-201ENST00000384668 107 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RNU6-1148P-201ENST00000410992 104 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.625-201ENST00000411256 107 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 POLHP1-201ENST00000411806 470 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 ELOCP19-201ENST00000411919 318 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 NDUFB4P5-201ENST00000415445 361 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RPL7P10-201ENST00000417407 739 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 TOMM22P1-201ENST00000418578 312 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RPL27AP8-201ENST00000424277 446 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RPL21P126-201ENST00000470049 478 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 S100A11P1-201ENST00000477525 312 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RN7SL481P-201ENST00000477764 299 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC078918.1-201ENST00000498515 228 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 TRBVA-201ENST00000498804 316 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 TTC39CP1-201ENST00000512513 755 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC015795.1-201ENST00000513669 327 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RNA5SP446-201ENST00000515955 82 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RNU6-1073P-201ENST00000517182 106 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 RAB9BP1-201ENST00000519581 626 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC090151.1-201ENST00000520784 730 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 CBX3P7-201ENST00000532876 502 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 MIR5583-1-201ENST00000580941 59 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 MIR4795-201ENST00000584182 89 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AL356055.1-201ENST00000602528 446 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC092747.3-201ENST00000603769 301 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC022893.3-201ENST00000607665 437 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 Z82243.1-201ENST00000609432 473 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC104237.2-201ENST00000612456 443 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AL445363.3-201ENST00000623080 671 ntBASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.44□□□□□ -1.7
TRIM39Q9HCM9 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 SNORD113-7-201ENST00000363762 77 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RNU6-434P-201ENST00000384376 107 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RNU6-1127P-201ENST00000384580 107 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 MIR514A1-201ENST00000385133 98 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AL160275.2-201ENST00000412010 394 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RPS12P24-201ENST00000412619 387 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RPL23AP25-201ENST00000430973 463 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AC069285.2-201ENST00000440210 275 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 RPS15AP27-201ENST00000449183 343 ntBASIC4.43□□□□□ -1.7
TRIM39Q9HCM9 AL645939.1-201ENST00000453429 797 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms