Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.16□□□□□ -2.22
VPS13AQ96RL7 RNA5SP393-201ENST00000363423 117 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 AC009965.2-201ENST00000425328 970 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 TRAV31-201ENST00000502780 342 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 RNA5SP82-201ENST00000516707 92 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AC016769.3-201ENST00000396562 315 ntBASIC1.15□□□□□ -2.22
VPS13AQ96RL7 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.15□□□□□ -2.22
VPS13AQ96RL7 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.15□□□□□ -2.22
VPS13AQ96RL7 NDUFS5P3-201ENST00000450668 321 ntBASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AL353718.1-201ENST00000451028 517 ntBASIC1.15□□□□□ -2.22
VPS13AQ96RL7 OR9N1P-202ENST00000494289 481 ntBASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AC022447.3-201ENST00000506865 495 ntBASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.15□□□□□ -2.22
VPS13AQ96RL7 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AC073413.2-201ENST00000604332 360 ntBASIC1.15□□□□□ -2.22
VPS13AQ96RL7 AP000560.1-201ENST00000624150 1937 ntBASIC1.15□□□□□ -2.23
VPS13AQ96RL7 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.15□□□□□ -2.23
VPS13AQ96RL7 AC004022.1-201ENST00000447766 1066 ntBASIC1.15□□□□□ -2.23
VPS13AQ96RL7 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.15□□□□□ -2.23
VPS13AQ96RL7 RPL23AP88-201ENST00000605759 454 ntBASIC1.15□□□□□ -2.23
VPS13AQ96RL7 MIR338-201ENST00000636369 67 ntBASIC1.15□□□□□ -2.23
VPS13AQ96RL7 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
VPS13AQ96RL7 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
VPS13AQ96RL7 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AL445687.1-201ENST00000439946 251 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 MIR5694-201ENST00000581190 76 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AC012531.5-201ENST00000611375 151 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 RPL23AP35-201ENST00000451906 501 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 RPS26P21-201ENST00000475397 348 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 MTCYBP35-201ENST00000503630 1137 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AC021755.4-201ENST00000616620 456 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 MTND5P9-201ENST00000503854 1755 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 AL139109.1-201ENST00000455491 297 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 MIR2909-201ENST00000617113 69 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 SNHG22-203ENST00000617833 660 ntBASIC1.14□□□□□ -2.23
VPS13AQ96RL7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.14□□□□□ -2.23
VPS13AQ96RL7 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.13□□□□□ -2.23
VPS13AQ96RL7 UBE2V1P13-201ENST00000436983 439 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC1.13□□□□□ -2.23
VPS13AQ96RL7 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 HSPE1P4-201ENST00000550617 308 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC1.13□□□□□ -2.23
VPS13AQ96RL7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.13□□□□□ -2.23
VPS13AQ96RL7 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.13□□□□□ -2.23
VPS13AQ96RL7 PSMA2P3-201ENST00000429685 675 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 MTND4LP5-201ENST00000605152 292 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 AC241377.1-201ENST00000619797 406 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
VPS13AQ96RL7 AC135776.4-201ENST00000624300 1904 ntBASIC1.13□□□□□ -2.23
VPS13AQ96RL7 MFSD8-213ENST00000641134 1327 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 CBX3P6-201ENST00000430257 527 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 AC087343.1-201ENST00000477341 475 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 AC012181.1-201ENST00000479895 423 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 DEFB108F-201ENST00000344638 222 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 Y_RNA.167-201ENST00000363735 109 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 EEF1B2P4-201ENST00000551398 348 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 ACTR3BP3-201ENST00000565577 979 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 AC009127.3-201ENST00000570531 403 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 MIR4446-201ENST00000578505 67 ntBASIC1.12□□□□□ -2.23
VPS13AQ96RL7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.12□□□□□ -2.23
VPS13AQ96RL7 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
VPS13AQ96RL7 AL030996.1-201ENST00000411430 235 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 RPL23AP41-201ENST00000484754 458 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 HAUS1P1-201ENST00000505275 832 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 AL031775.1-201ENST00000607014 887 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 AC121761.2-201ENST00000617300 689 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
VPS13AQ96RL7 AL356118.1-201ENST00000635272 1078 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.11□□□□□ -2.23
VPS13AQ96RL7 RNU4-52P-201ENST00000384209 138 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 SNRPEP10-201ENST00000420249 274 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC1.11□□□□□ -2.23
VPS13AQ96RL7 AL161713.1-201ENST00000555538 145 ntBASIC1.11□□□□□ -2.23
VPS13AQ96RL7 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.11□□□□□ -2.23
VPS13AQ96RL7 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.11□□□□□ -2.23
VPS13AQ96RL7 RPS27AP10-201ENST00000496103 208 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 MTCO2P9-201ENST00000503214 694 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 AC093801.2-201ENST00000503966 1050 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.1□□□□□ -2.23
VPS13AQ96RL7 DUXAP11-201ENST00000603858 526 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms