Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL022401.1-201ENST00000619498 108 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 MIR3662-201ENST00000637030 95 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 TPTE2P4-201ENST00000258589 1605 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 MTND4P14-201ENST00000435799 1354 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 NACAP2-201ENST00000318548 624 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RPL7P26-201ENST00000333817 754 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RNU6-1197P-201ENST00000391183 107 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 HMGN2P8-201ENST00000391458 268 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AL139397.2-201ENST00000404529 772 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RNA5SP118-201ENST00000410385 109 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RN7SKP106-201ENST00000410832 272 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RNU6-193P-201ENST00000410977 107 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 OR9R1P-201ENST00000412200 877 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RPL7P46-201ENST00000425129 740 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC011742.1-201ENST00000431448 434 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RPS17P8-201ENST00000434525 335 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 HMGB1P31-201ENST00000437242 427 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 KRTAP8-2P-201ENST00000440620 186 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 SNRPFP3-201ENST00000457792 225 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC063943.1-201ENST00000465434 453 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 TRBV1-201ENST00000476502 284 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RN7SL319P-201ENST00000480656 221 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AL160314.1-201ENST00000490836 438 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC069439.1-201ENST00000494739 167 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RPL30P5-201ENST00000494923 336 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 APOOP4-201ENST00000513530 597 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 RN7SKP13-201ENST00000515933 244 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AL121576.1-201ENST00000556055 276 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC093249.4-201ENST00000564755 259 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AL670379.4-201ENST00000605279 254 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AL121932.1-201ENST00000605542 214 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC079684.1-201ENST00000621405 437 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 MTND1P37-201ENST00000636562 264 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC007785.2-201ENST00000598627 1916 ntBASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
CCDC28AQ8IWP9 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AL354685.2-201ENST00000448218 1447 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RNU1-63P-201ENST00000383902 164 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RNU6-550P-201ENST00000391057 101 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 PTMAP5-201ENST00000393073 333 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 UBE2V1P2-201ENST00000397758 440 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 U3.36-201ENST00000408418 213 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC079355.1-201ENST00000421770 223 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AL355433.1-201ENST00000422804 300 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC007919.1-201ENST00000429380 217 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 FCF1P3-201ENST00000496394 590 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 EIF4EP3-201ENST00000498782 656 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RPL38P4-201ENST00000502376 214 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RNU4-29P-201ENST00000515943 174 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RNA5SP43-201ENST00000516559 110 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RNU6-358P-201ENST00000516564 75 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 RNA5SP471-201ENST00000516971 106 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 SUMO2P20-201ENST00000520803 283 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 AC134698.4-201ENST00000523451 826 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 SYF2P1-201ENST00000550658 413 ntBASIC3.63□□□□□ -1.83
CCDC28AQ8IWP9 TRAV28-201ENST00000557548 323 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms