Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AC036111.3-201ENST00000526389 112 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 PABPC1P9-201ENST00000426076 1612 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
COL7A1Q02388 RNU1-133P-201ENST00000364867 167 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC0.94□□□□□ -2.26
COL7A1Q02388 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.94□□□□□ -2.26
COL7A1Q02388 SUMO1P4-201ENST00000429430 302 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.94□□□□□ -2.26
COL7A1Q02388 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.94□□□□□ -2.26
COL7A1Q02388 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC0.94□□□□□ -2.26
COL7A1Q02388 HSPE1P20-201ENST00000538133 289 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.94□□□□□ -2.26
COL7A1Q02388 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC0.94□□□□□ -2.26
COL7A1Q02388 MIR5694-201ENST00000581190 76 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 CBX3P2-202ENST00000583365 535 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC0.94□□□□□ -2.26
COL7A1Q02388 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.94□□□□□ -2.26
COL7A1Q02388 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC0.94□□□□□ -2.26
COL7A1Q02388 RNA5SP295-201ENST00000362655 121 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 MIR320A-201ENST00000385302 82 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 RNU2-25P-201ENST00000411041 191 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 RPL31P35-201ENST00000431058 377 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC0.94□□□□□ -2.26
COL7A1Q02388 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.94□□□□□ -2.26
COL7A1Q02388 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC0.94□□□□□ -2.26
COL7A1Q02388 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC0.94□□□□□ -2.26
COL7A1Q02388 Y_RNA.675-201ENST00000516389 149 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 DUXAP5-201ENST00000529668 529 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 SUB1P4-201ENST00000566062 339 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 AC083899.3-201ENST00000603413 594 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 uc_338.20-201ENST00000621563 178 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 AC004943.3-201ENST00000624116 600 ntBASIC0.94□□□□□ -2.26
COL7A1Q02388 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
COL7A1Q02388 Y_RNA.258-201ENST00000364613 105 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 RNU1-109P-201ENST00000383960 147 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 RNU6-198P-201ENST00000384258 104 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC0.93□□□□□ -2.26
COL7A1Q02388 AL590233.1-201ENST00000430017 456 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC0.93□□□□□ -2.26
COL7A1Q02388 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.93□□□□□ -2.26
COL7A1Q02388 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.93□□□□□ -2.26
COL7A1Q02388 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC0.93□□□□□ -2.26
COL7A1Q02388 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC0.93□□□□□ -2.26
COL7A1Q02388 AL139109.1-201ENST00000455491 297 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 AC092451.1-201ENST00000480211 153 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 AC008427.1-201ENST00000503102 655 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 CD24P2-201ENST00000565486 219 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 BNIP3P7-201ENST00000605641 516 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
COL7A1Q02388 AC011477.1-204ENST00000623416 1325 ntBASIC0.93□□□□□ -2.26
COL7A1Q02388 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
COL7A1Q02388 Y_RNA.136-201ENST00000363444 102 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AL357078.2-201ENST00000416486 427 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 CYCSP48-201ENST00000417124 323 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC0.92□□□□□ -2.26
COL7A1Q02388 AC104308.1-201ENST00000454621 333 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AP000873.1-201ENST00000463987 400 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC114786.4-201ENST00000508771 728 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC114797.1-201ENST00000514003 728 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.92□□□□□ -2.26
COL7A1Q02388 CBX3P8-201ENST00000532412 525 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 ACTR3BP3-201ENST00000565577 979 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 DUXAP9-208ENST00000622815 614 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 Y_RNA.60-201ENST00000362831 98 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 Y_RNA.85-201ENST00000363014 111 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 RNU6-146P-201ENST00000384602 108 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC073264.1-201ENST00000411508 416 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 FABP5P3-201ENST00000437960 408 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC107032.1-201ENST00000485945 480 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 RN7SKP265-201ENST00000516448 223 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 RNU1-92P-201ENST00000517017 135 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC0.92□□□□□ -2.26
COL7A1Q02388 GLUD1P4-201ENST00000590914 418 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AL138955.1-201ENST00000622881 1040 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
COL7A1Q02388 MIR338-201ENST00000636369 67 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC0.92□□□□□ -2.26
COL7A1Q02388 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC0.92□□□□□ -2.26
COL7A1Q02388 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
COL7A1Q02388 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC0.92□□□□□ -2.26
COL7A1Q02388 CBX3P6-201ENST00000430257 527 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 XKRYP6-201ENST00000440468 1116 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 XKRYP3-201ENST00000442113 1116 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.92□□□□□ -2.26
COL7A1Q02388 AL353718.1-201ENST00000451028 517 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC0.92□□□□□ -2.26
COL7A1Q02388 AC087343.1-201ENST00000477341 475 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC0.92□□□□□ -2.26
COL7A1Q02388 AC096571.1-202ENST00000506634 735 ntBASIC0.92□□□□□ -2.26
COL7A1Q02388 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC0.92□□□□□ -2.26
COL7A1Q02388 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
COL7A1Q02388 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
COL7A1Q02388 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.91□□□□□ -2.26
COL7A1Q02388 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
COL7A1Q02388 AL136164.4-201ENST00000625013 2135 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC0.91□□□□□ -2.26
COL7A1Q02388 AC092832.1-201ENST00000422934 400 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 ARPC3P2-201ENST00000457786 533 ntBASIC0.91□□□□□ -2.26
COL7A1Q02388 SNORD121B-201ENST00000458838 81 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms