Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
LIG3P49916 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
LIG3P49916 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
LIG3P49916 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LIG3P49916 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LIG3P49916 MAPK10-303ENST00000641324 3959 ntBASIC4.98□□□□□ -1.61
LIG3P49916 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
LIG3P49916 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
LIG3P49916 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LIG3P49916 AL049641.1-201ENST00000441055 1948 ntBASIC4.98□□□□□ -1.61
LIG3P49916 SNORD3E-201ENST00000362899 217 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RN7SKP103-201ENST00000363848 320 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RNU6-1040P-201ENST00000383974 107 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RPS4XP7-201ENST00000406274 780 ntBASIC4.98□□□□□ -1.61
LIG3P49916 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 Y_RNA.646-201ENST00000410980 101 ntBASIC4.98□□□□□ -1.61
LIG3P49916 AC119751.6-201ENST00000416712 186 ntBASIC4.98□□□□□ -1.61
LIG3P49916 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.98□□□□□ -1.61
LIG3P49916 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.98□□□□□ -1.61
LIG3P49916 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 AC069285.2-201ENST00000440210 275 ntBASIC4.98□□□□□ -1.61
LIG3P49916 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LIG3P49916 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.98□□□□□ -1.61
LIG3P49916 AC026801.1-201ENST00000497178 464 ntBASIC4.98□□□□□ -1.61
LIG3P49916 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.98□□□□□ -1.61
LIG3P49916 GMPSP1-201ENST00000514075 579 ntBASIC4.98□□□□□ -1.61
LIG3P49916 SNORA31.3-201ENST00000516029 96 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RNU6-1213P-201ENST00000517075 94 ntBASIC4.98□□□□□ -1.61
LIG3P49916 Y_RNA.720-201ENST00000517166 92 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RNU1-54P-201ENST00000517181 120 ntBASIC4.98□□□□□ -1.61
LIG3P49916 SNORA31.22-201ENST00000517204 135 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RNU4-60P-201ENST00000517239 135 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RN7SKP295-201ENST00000517264 153 ntBASIC4.98□□□□□ -1.61
LIG3P49916 AC009902.1-201ENST00000519351 183 ntBASIC4.98□□□□□ -1.61
LIG3P49916 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.98□□□□□ -1.61
LIG3P49916 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.98□□□□□ -1.61
LIG3P49916 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.98□□□□□ -1.61
LIG3P49916 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.98□□□□□ -1.61
LIG3P49916 BDH2P1-201ENST00000602288 736 ntBASIC4.98□□□□□ -1.61
LIG3P49916 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.98□□□□□ -1.61
LIG3P49916 FAM25E-202ENST00000608562 189 ntBASIC4.98□□□□□ -1.61
LIG3P49916 AC091925.1-201ENST00000623204 462 ntBASIC4.98□□□□□ -1.61
LIG3P49916 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.98□□□□□ -1.61
LIG3P49916 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.98□□□□□ -1.61
LIG3P49916 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.97□□□□□ -1.61
LIG3P49916 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.97□□□□□ -1.61
LIG3P49916 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
LIG3P49916 AC018529.3-201ENST00000624212 2254 ntBASIC4.97□□□□□ -1.61
LIG3P49916 PRO1804-201ENST00000623780 2050 ntBASIC4.97□□□□□ -1.61
LIG3P49916 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
LIG3P49916 SNORA75B-201ENST00000384053 137 ntBASIC4.97□□□□□ -1.61
LIG3P49916 RNU6-328P-201ENST00000390887 106 ntBASIC4.97□□□□□ -1.61
LIG3P49916 AL590704.1-201ENST00000402856 794 ntBASIC4.97□□□□□ -1.61
LIG3P49916 AC113618.1-201ENST00000416747 285 ntBASIC4.97□□□□□ -1.61
LIG3P49916 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.97□□□□□ -1.61
LIG3P49916 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.97□□□□□ -1.61
LIG3P49916 AL450023.3-201ENST00000440592 271 ntBASIC4.97□□□□□ -1.61
LIG3P49916 TDGF1P1-201ENST00000445734 527 ntBASIC4.97□□□□□ -1.61
LIG3P49916 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.97□□□□□ -1.61
LIG3P49916 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.97□□□□□ -1.61
LIG3P49916 AC083982.1-201ENST00000485679 344 ntBASIC4.97□□□□□ -1.61
LIG3P49916 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.97□□□□□ -1.61
LIG3P49916 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.97□□□□□ -1.61
LIG3P49916 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.97□□□□□ -1.61
LIG3P49916 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.97□□□□□ -1.61
LIG3P49916 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.97□□□□□ -1.61
LIG3P49916 HNRNPCP4-201ENST00000571636 900 ntBASIC4.97□□□□□ -1.61
LIG3P49916 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.97□□□□□ -1.61
LIG3P49916 LINC00901.1-201ENST00000617252 152 ntBASIC4.97□□□□□ -1.61
LIG3P49916 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.97□□□□□ -1.61
LIG3P49916 DHX9P1-201ENST00000436565 3076 ntBASIC4.97□□□□□ -1.61
LIG3P49916 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
LIG3P49916 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.97□□□□□ -1.61
LIG3P49916 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIG3P49916 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
LIG3P49916 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
LIG3P49916 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.96□□□□□ -1.62
LIG3P49916 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.96□□□□□ -1.62
LIG3P49916 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LIG3P49916 MIR448-201ENST00000362131 111 ntBASIC4.96□□□□□ -1.62
LIG3P49916 RNU6-45P-201ENST00000384471 107 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC093414.1-201ENST00000434712 514 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC006466.1-201ENST00000438721 289 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AL035666.1-201ENST00000446195 348 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AL691482.1-201ENST00000453255 87 ntBASIC4.96□□□□□ -1.62
LIG3P49916 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.96□□□□□ -1.62
LIG3P49916 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC108145.1-201ENST00000503770 153 ntBASIC4.96□□□□□ -1.62
LIG3P49916 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms