Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CTCFP49711 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.86□□□□□ -1.79
CTCFP49711 AL031176.1-201ENST00000604554 466 ntBASIC3.86□□□□□ -1.79
CTCFP49711 PLCE1P1-201ENST00000622094 305 ntBASIC3.86□□□□□ -1.79
CTCFP49711 AC021755.1-201ENST00000559747 1447 ntBASIC3.86□□□□□ -1.79
CTCFP49711 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CTCFP49711 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.85□□□□□ -1.79
CTCFP49711 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CTCFP49711 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.85□□□□□ -1.79
CTCFP49711 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CTCFP49711 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CTCFP49711 MFSD8-233ENST00000641482 4860 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC000403.1-201ENST00000613696 3585 ntBASIC3.85□□□□□ -1.79
CTCFP49711 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CTCFP49711 RNU6-50P-201ENST00000362356 103 ntBASIC3.85□□□□□ -1.79
CTCFP49711 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.85□□□□□ -1.79
CTCFP49711 MIR135A2-201ENST00000384854 100 ntBASIC3.85□□□□□ -1.79
CTCFP49711 U8.14-201ENST00000390843 143 ntBASIC3.85□□□□□ -1.79
CTCFP49711 RPS3AP26-201ENST00000398259 784 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC109780.2-201ENST00000413467 845 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AL137014.1-201ENST00000420490 1226 ntBASIC3.85□□□□□ -1.79
CTCFP49711 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC079780.1-201ENST00000428259 207 ntBASIC3.85□□□□□ -1.79
CTCFP49711 MED14P1-201ENST00000430517 648 ntBASIC3.85□□□□□ -1.79
CTCFP49711 MYL8P-204ENST00000431574 518 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AL603825.1-201ENST00000438481 80 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.85□□□□□ -1.79
CTCFP49711 MTND1P30-201ENST00000441241 901 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.85□□□□□ -1.79
CTCFP49711 MTND2P4-201ENST00000445034 1004 ntBASIC3.85□□□□□ -1.79
CTCFP49711 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.85□□□□□ -1.79
CTCFP49711 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CTCFP49711 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 OR5BM1P-201ENST00000512021 366 ntBASIC3.85□□□□□ -1.79
CTCFP49711 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.85□□□□□ -1.79
CTCFP49711 RNU6-528P-201ENST00000516926 100 ntBASIC3.85□□□□□ -1.79
CTCFP49711 NDUFB9P3-201ENST00000521269 501 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC008489.1-201ENST00000524271 483 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.85□□□□□ -1.79
CTCFP49711 HIGD1AP1-201ENST00000550979 275 ntBASIC3.85□□□□□ -1.79
CTCFP49711 UBE2L4-201ENST00000587688 464 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC010620.1-201ENST00000601088 1102 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AC098826.3-201ENST00000603823 466 ntBASIC3.85□□□□□ -1.79
CTCFP49711 AL158801.5-201ENST00000623123 465 ntBASIC3.85□□□□□ -1.79
CTCFP49711 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CTCFP49711 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
CTCFP49711 ELF2P3-201ENST00000445099 1506 ntBASIC3.85□□□□□ -1.79
CTCFP49711 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.85□□□□□ -1.79
CTCFP49711 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
CTCFP49711 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CTCFP49711 FRG1BP-201ENST00000278882 761 ntBASIC3.84□□□□□ -1.79
CTCFP49711 RNU4-21P-201ENST00000362802 126 ntBASIC3.84□□□□□ -1.79
CTCFP49711 RNU5F-6P-201ENST00000362979 116 ntBASIC3.84□□□□□ -1.79
CTCFP49711 RNU6-1074P-201ENST00000383995 104 ntBASIC3.84□□□□□ -1.79
CTCFP49711 MT-TH-201ENST00000387441 69 ntBASIC3.84□□□□□ -1.79
CTCFP49711 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CTCFP49711 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CTCFP49711 MIR1302-8-201ENST00000408342 128 ntBASIC3.84□□□□□ -1.79
CTCFP49711 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.84□□□□□ -1.79
CTCFP49711 RPL21P32-201ENST00000419877 477 ntBASIC3.84□□□□□ -1.79
CTCFP49711 RPS15AP6-201ENST00000420703 385 ntBASIC3.84□□□□□ -1.79
CTCFP49711 RPL21P40-201ENST00000428586 483 ntBASIC3.84□□□□□ -1.79
CTCFP49711 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.84□□□□□ -1.79
CTCFP49711 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.84□□□□□ -1.79
CTCFP49711 FAM103A2P-201ENST00000444122 354 ntBASIC3.84□□□□□ -1.79
CTCFP49711 GDI2P2-201ENST00000445131 608 ntBASIC3.84□□□□□ -1.79
CTCFP49711 RPL36AP33-201ENST00000450395 310 ntBASIC3.84□□□□□ -1.79
CTCFP49711 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.84□□□□□ -1.79
CTCFP49711 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.84□□□□□ -1.79
CTCFP49711 AC126389.1-201ENST00000477436 290 ntBASIC3.84□□□□□ -1.79
CTCFP49711 AC132942.1-201ENST00000486753 483 ntBASIC3.84□□□□□ -1.79
CTCFP49711 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.84□□□□□ -1.79
CTCFP49711 AC105914.1-201ENST00000511798 226 ntBASIC3.84□□□□□ -1.79
CTCFP49711 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.84□□□□□ -1.79
CTCFP49711 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.84□□□□□ -1.79
CTCFP49711 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CTCFP49711 AP000873.5-201ENST00000533906 236 ntBASIC3.84□□□□□ -1.79
CTCFP49711 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.84□□□□□ -1.79
CTCFP49711 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.84□□□□□ -1.79
CTCFP49711 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CTCFP49711 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.84□□□□□ -1.79
CTCFP49711 HMGB1P6-201ENST00000569046 646 ntBASIC3.84□□□□□ -1.79
CTCFP49711 OR4K8P-201ENST00000578842 1048 ntBASIC3.84□□□□□ -1.79
CTCFP49711 KLKP1-201ENST00000595979 403 ntBASIC3.84□□□□□ -1.79
CTCFP49711 AC105129.3-201ENST00000605455 485 ntBASIC3.84□□□□□ -1.79
CTCFP49711 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.84□□□□□ -1.79
CTCFP49711 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.84□□□□□ -1.79
CTCFP49711 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.84□□□□□ -1.79
CTCFP49711 CCT4P2-201ENST00000233836 1548 ntBASIC3.84□□□□□ -1.8
CTCFP49711 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
CTCFP49711 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.83□□□□□ -1.8
CTCFP49711 AP006437.1-201ENST00000641440 3685 ntBASIC3.83□□□□□ -1.8
CTCFP49711 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CTCFP49711 AC062016.1-201ENST00000355719 319 ntBASIC3.83□□□□□ -1.8
CTCFP49711 SNORA26.8-201ENST00000391306 124 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms