Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR195-201ENST00000385194 87 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNU6-837P-201ENST00000391056 108 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL583835.1-201ENST00000399570 407 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 MIR1911-201ENST00000410783 80 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RPS23P10-201ENST00000416185 486 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC068533.1-201ENST00000418542 415 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 RPL35AP12-201ENST00000425362 338 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 AL117339.2-201ENST00000430475 180 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD3P31249 TAAR7P-201ENST00000436141 242 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 MTCO3P45-201ENST00000443036 613 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 MTND1P18-201ENST00000448191 573 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 RNU6-333P-201ENST00000459117 107 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 SNORD97-201ENST00000459187 142 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC034236.1-201ENST00000469891 373 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RN7SL132P-201ENST00000478131 296 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RPL38P4-201ENST00000502376 214 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 RBBP4P6-201ENST00000508098 202 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL592156.1-201ENST00000508758 304 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 TTC39CP1-201ENST00000512513 755 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNU4-29P-201ENST00000515943 174 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 RNU6-390P-201ENST00000516259 103 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXD3P31249 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD3P31249 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXD3P31249 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 AL121603.1-201ENST00000553815 142 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD3P31249 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 MIR5583-1-201ENST00000580941 59 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD3P31249 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 AL354984.3-201ENST00000604803 325 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AL138721.1-201ENST00000616756 179 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 SNHG22-203ENST00000617833 660 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC009248.2-201ENST00000619826 254 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD3P31249 AC025034.2-201ENST00000623264 286 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC112484.5-201ENST00000624189 228 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC034229.5-201ENST00000624258 185 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 MIR492-201ENST00000638676 116 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXD3P31249 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD3P31249 AC004972.1-201ENST00000623934 2209 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 DDX10P1-201ENST00000448545 1933 ntBASIC3.31□□□□□ -1.88
HOXD3P31249 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXD3P31249 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.3□□□□□ -1.88
HOXD3P31249 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 MTND5P17-201ENST00000418405 1603 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD3P31249 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 GABPAP-201ENST00000419271 1356 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXD3P31249 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 RNU6-179P-201ENST00000363350 107 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 RNU6-1284P-201ENST00000363701 100 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 SNORD115-7-201ENST00000365306 82 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 Y_RNA.576-201ENST00000384781 102 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 MIR670-201ENST00000390142 98 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 SOD2P1-201ENST00000396543 562 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AL122016.1-201ENST00000403365 367 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AL356432.1-201ENST00000405809 419 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 RNU2-43P-201ENST00000410306 190 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 RN7SKP202-201ENST00000410439 330 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD3P31249 PPP1R11P2-201ENST00000423543 382 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 RPL7L1P10-201ENST00000427790 463 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD3P31249 CYCSP43-201ENST00000438233 310 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 RPL7P12-201ENST00000446719 750 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 RPL21P99-201ENST00000480369 423 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 AC008958.1-201ENST00000511047 682 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 RNU7-30P-201ENST00000516835 62 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 RNA5SP503-201ENST00000517047 117 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms