Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.33□□□□□ -2.04
USF1P22415 AP000852.1-201ENST00000472460 573 ntBASIC2.33□□□□□ -2.04
USF1P22415 AL049874.1-201ENST00000489560 388 ntBASIC2.33□□□□□ -2.04
USF1P22415 XKRY-201ENST00000510392 1100 ntBASIC2.33□□□□□ -2.04
USF1P22415 AC093752.1-206ENST00000511823 336 ntBASIC2.33□□□□□ -2.04
USF1P22415 AC006499.2-201ENST00000513470 337 ntBASIC2.33□□□□□ -2.04
USF1P22415 RNU6-928P-201ENST00000516876 104 ntBASIC2.33□□□□□ -2.04
USF1P22415 MTND1P36-201ENST00000522384 936 ntBASIC2.33□□□□□ -2.04
USF1P22415 MTCO1P47-201ENST00000523889 1271 ntBASIC2.33□□□□□ -2.04
USF1P22415 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.33□□□□□ -2.04
USF1P22415 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.33□□□□□ -2.04
USF1P22415 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.33□□□□□ -2.04
USF1P22415 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.33□□□□□ -2.04
USF1P22415 AC124947.2-202ENST00000552735 133 ntBASIC2.33□□□□□ -2.04
USF1P22415 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.33□□□□□ -2.04
USF1P22415 AL158211.4-201ENST00000606988 584 ntBASIC2.33□□□□□ -2.04
USF1P22415 AC123767.1-202ENST00000620407 817 ntBASIC2.33□□□□□ -2.04
USF1P22415 AC008443.7-201ENST00000622195 246 ntBASIC2.33□□□□□ -2.04
USF1P22415 AC079597.1-201ENST00000624306 508 ntBASIC2.33□□□□□ -2.04
USF1P22415 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.33□□□□□ -2.04
USF1P22415 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
USF1P22415 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USF1P22415 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USF1P22415 RNU1-105P-201ENST00000363470 161 ntBASIC2.32□□□□□ -2.04
USF1P22415 SNORA36C-201ENST00000384289 132 ntBASIC2.32□□□□□ -2.04
USF1P22415 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USF1P22415 SNORA40.2-201ENST00000390847 128 ntBASIC2.32□□□□□ -2.04
USF1P22415 RNA5SP21-201ENST00000410917 96 ntBASIC2.32□□□□□ -2.04
USF1P22415 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.32□□□□□ -2.04
USF1P22415 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 GTF2IP3-201ENST00000433887 494 ntBASIC2.32□□□□□ -2.04
USF1P22415 AL714022.1-201ENST00000439897 151 ntBASIC2.32□□□□□ -2.04
USF1P22415 AP000936.2-201ENST00000447151 681 ntBASIC2.32□□□□□ -2.04
USF1P22415 MTND2P24-201ENST00000453434 806 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC116337.2-201ENST00000477662 156 ntBASIC2.32□□□□□ -2.04
USF1P22415 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USF1P22415 AL135752.1-201ENST00000479477 471 ntBASIC2.32□□□□□ -2.04
USF1P22415 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.32□□□□□ -2.04
USF1P22415 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.32□□□□□ -2.04
USF1P22415 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.32□□□□□ -2.04
USF1P22415 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.32□□□□□ -2.04
USF1P22415 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.32□□□□□ -2.04
USF1P22415 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.32□□□□□ -2.04
USF1P22415 TTC39CP1-201ENST00000512513 755 ntBASIC2.32□□□□□ -2.04
USF1P22415 SNORA9.3-201ENST00000516383 129 ntBASIC2.32□□□□□ -2.04
USF1P22415 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 AC005832.3-201ENST00000537929 631 ntBASIC2.32□□□□□ -2.04
USF1P22415 HPRT1P3-201ENST00000539521 576 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.32□□□□□ -2.04
USF1P22415 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 AC004987.4-201ENST00000603383 338 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC068313.1-201ENST00000604028 1008 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC136601.2-201ENST00000604356 474 ntBASIC2.32□□□□□ -2.04
USF1P22415 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.32□□□□□ -2.04
USF1P22415 AL445264.1-201ENST00000621719 171 ntBASIC2.32□□□□□ -2.04
USF1P22415 AL138955.1-201ENST00000622881 1040 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC104985.3-201ENST00000623479 597 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC073308.1-201ENST00000623696 305 ntBASIC2.32□□□□□ -2.04
USF1P22415 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USF1P22415 AC079228.1-201ENST00000624774 1049 ntBASIC2.32□□□□□ -2.04
USF1P22415 AL159972.1-201ENST00000625150 448 ntBASIC2.32□□□□□ -2.04
USF1P22415 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USF1P22415 AL049641.1-201ENST00000441055 1948 ntBASIC2.32□□□□□ -2.04
USF1P22415 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
USF1P22415 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USF1P22415 OR4G2P-202ENST00000641004 1759 ntBASIC2.31□□□□□ -2.04
USF1P22415 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.31□□□□□ -2.04
USF1P22415 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
USF1P22415 Y_RNA.234-201ENST00000364409 97 ntBASIC2.31□□□□□ -2.04
USF1P22415 Y_RNA.408-201ENST00000383987 102 ntBASIC2.31□□□□□ -2.04
USF1P22415 MIR325-201ENST00000385260 98 ntBASIC2.31□□□□□ -2.04
USF1P22415 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
USF1P22415 RNA5SP354-201ENST00000391247 136 ntBASIC2.31□□□□□ -2.04
USF1P22415 Z85995.1-201ENST00000415547 335 ntBASIC2.31□□□□□ -2.04
USF1P22415 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 AL513477.1-202ENST00000417061 214 ntBASIC2.31□□□□□ -2.04
USF1P22415 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.31□□□□□ -2.04
USF1P22415 RNF2P1-201ENST00000442955 1010 ntBASIC2.31□□□□□ -2.04
USF1P22415 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.31□□□□□ -2.04
USF1P22415 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 RNU7-136P-201ENST00000458819 69 ntBASIC2.31□□□□□ -2.04
USF1P22415 SNORD121B-201ENST00000458838 81 ntBASIC2.31□□□□□ -2.04
USF1P22415 MTND4LP3-201ENST00000468320 276 ntBASIC2.31□□□□□ -2.04
USF1P22415 RPS27P26-201ENST00000494583 239 ntBASIC2.31□□□□□ -2.04
USF1P22415 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.31□□□□□ -2.04
USF1P22415 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.31□□□□□ -2.04
USF1P22415 AC096725.1-201ENST00000514266 313 ntBASIC2.31□□□□□ -2.04
USF1P22415 RNU4-29P-201ENST00000515943 174 ntBASIC2.31□□□□□ -2.04
USF1P22415 RNU6-1256P-201ENST00000516539 103 ntBASIC2.31□□□□□ -2.04
USF1P22415 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.31□□□□□ -2.04
USF1P22415 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.31□□□□□ -2.04
USF1P22415 ELOCP31-201ENST00000540463 467 ntBASIC2.31□□□□□ -2.04
USF1P22415 AP002770.2-201ENST00000543613 532 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms