Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 MTND1P34-201ENST00000438556 671 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
MSH3P20585 MTND6P13-201ENST00000443510 523 ntBASIC3.33□□□□□ -1.88
MSH3P20585 RPL17P49-201ENST00000443728 411 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 PRDX3P3-201ENST00000447765 522 ntBASIC3.33□□□□□ -1.88
MSH3P20585 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH3P20585 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH3P20585 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH3P20585 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH3P20585 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 RN7SL442P-201ENST00000473804 320 ntBASIC3.33□□□□□ -1.88
MSH3P20585 ST13P14-201ENST00000474095 734 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC093663.1-201ENST00000497190 394 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 MTND2P33-201ENST00000506452 1031 ntBASIC3.33□□□□□ -1.88
MSH3P20585 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 PHBP14-201ENST00000512887 367 ntBASIC3.33□□□□□ -1.88
MSH3P20585 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 AC017037.2-201ENST00000513850 890 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AP003392.2-201ENST00000527269 208 ntBASIC3.33□□□□□ -1.88
MSH3P20585 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH3P20585 CCNG2P1-201ENST00000549521 1000 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AL157394.1-201ENST00000562983 1224 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 MIR4276-201ENST00000584832 70 ntBASIC3.33□□□□□ -1.88
MSH3P20585 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH3P20585 AC080078.2-201ENST00000603766 501 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC090578.1-201ENST00000604955 591 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC109347.2-201ENST00000610220 349 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC087241.4-201ENST00000612441 480 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC008250.2-201ENST00000615261 205 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC084757.4-201ENST00000616350 526 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC009159.1-201ENST00000618386 642 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AC012150.2-201ENST00000621300 544 ntBASIC3.33□□□□□ -1.88
MSH3P20585 PLCE1P1-201ENST00000622094 305 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AL356585.4-201ENST00000623078 1229 ntBASIC3.33□□□□□ -1.88
MSH3P20585 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH3P20585 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
MSH3P20585 AC116096.1-201ENST00000566804 2314 ntBASIC3.33□□□□□ -1.88
MSH3P20585 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
MSH3P20585 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH3P20585 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSH3P20585 AC009902.3-201ENST00000606235 2172 ntBASIC3.32□□□□□ -1.88
MSH3P20585 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSH3P20585 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
MSH3P20585 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH3P20585 AL356274.2-201ENST00000624379 3752 ntBASIC3.32□□□□□ -1.88
MSH3P20585 RNU1-33P-201ENST00000364249 162 ntBASIC3.32□□□□□ -1.88
MSH3P20585 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH3P20585 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
MSH3P20585 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSH3P20585 AP000567.1-201ENST00000406413 156 ntBASIC3.32□□□□□ -1.88
MSH3P20585 Y_RNA.599-201ENST00000410489 109 ntBASIC3.32□□□□□ -1.88
MSH3P20585 HMGB3P23-201ENST00000414981 585 ntBASIC3.32□□□□□ -1.88
MSH3P20585 MTCO1P21-201ENST00000416634 589 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AL353777.1-201ENST00000425552 326 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH3P20585 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH3P20585 UBE2V1P13-201ENST00000436983 439 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH3P20585 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.32□□□□□ -1.88
MSH3P20585 ELOCP30-201ENST00000447108 299 ntBASIC3.32□□□□□ -1.88
MSH3P20585 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH3P20585 RPS24P6-201ENST00000452670 400 ntBASIC3.32□□□□□ -1.88
MSH3P20585 HMGN1P18-201ENST00000457642 277 ntBASIC3.32□□□□□ -1.88
MSH3P20585 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH3P20585 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSH3P20585 NDUFB4P2-201ENST00000509515 391 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH3P20585 RN7SKP298-201ENST00000515950 94 ntBASIC3.32□□□□□ -1.88
MSH3P20585 MIR2276-201ENST00000516886 89 ntBASIC3.32□□□□□ -1.88
MSH3P20585 RNU6-1073P-201ENST00000517182 106 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH3P20585 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH3P20585 AC109635.4-202ENST00000531666 412 ntBASIC3.32□□□□□ -1.88
MSH3P20585 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.32□□□□□ -1.88
MSH3P20585 EIF1P4-201ENST00000572664 335 ntBASIC3.32□□□□□ -1.88
MSH3P20585 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH3P20585 HMGN1P30-201ENST00000589286 268 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC012669.1-201ENST00000603209 283 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AL356321.1-201ENST00000621360 228 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC244100.1-202ENST00000621554 382 ntBASIC3.32□□□□□ -1.88
MSH3P20585 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH3P20585 AC079597.1-201ENST00000624306 508 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC011460.1-201ENST00000636268 1834 ntBASIC3.32□□□□□ -1.88
MSH3P20585 AC244517.1-201ENST00000606030 2086 ntBASIC3.32□□□□□ -1.88
MSH3P20585 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSH3P20585 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSH3P20585 AC092447.7-201ENST00000422212 1621 ntBASIC3.31□□□□□ -1.88
MSH3P20585 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSH3P20585 Y_RNA.41-201ENST00000362646 102 ntBASIC3.31□□□□□ -1.88
MSH3P20585 RNU6-1249P-201ENST00000363237 111 ntBASIC3.31□□□□□ -1.88
MSH3P20585 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
MSH3P20585 CCNG1P1-201ENST00000406783 885 ntBASIC3.31□□□□□ -1.88
MSH3P20585 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms