Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
COL6A3P12111 AC089999.1-201ENST00000460336 374 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AC090515.1-201ENST00000465295 476 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.39□□□□□ -2.19
COL6A3P12111 AL161713.1-201ENST00000555538 145 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
COL6A3P12111 MIR365B-201ENST00000362317 111 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 RPL7P53-201ENST00000421245 739 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.39□□□□□ -2.19
COL6A3P12111 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.39□□□□□ -2.19
COL6A3P12111 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.38□□□□□ -2.19
COL6A3P12111 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL6A3P12111 RNU6-670P-201ENST00000364312 104 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AL512504.1-201ENST00000415494 778 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.38□□□□□ -2.19
COL6A3P12111 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.38□□□□□ -2.19
COL6A3P12111 RPL9P9-202ENST00000466501 579 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AC104115.2-201ENST00000523026 687 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AP003497.1-201ENST00000528472 562 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AL049838.1-201ENST00000563647 981 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 BX322635.1-201ENST00000605804 496 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AC011890.2-201ENST00000613393 294 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.38□□□□□ -2.19
COL6A3P12111 MTND5P10-201ENST00000603719 1809 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL6A3P12111 AC016769.3-201ENST00000396562 315 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AC114973.1-201ENST00000429057 632 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 RPL34P26-201ENST00000445636 354 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AC004022.1-201ENST00000447766 1066 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 snoU13.19-201ENST00000459148 104 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.38□□□□□ -2.19
COL6A3P12111 RNU4-60P-201ENST00000517239 135 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AL031775.1-201ENST00000607014 887 ntBASIC1.38□□□□□ -2.19
COL6A3P12111 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.37□□□□□ -2.19
COL6A3P12111 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.37□□□□□ -2.19
COL6A3P12111 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.37□□□□□ -2.19
COL6A3P12111 AP003033.1-201ENST00000527244 415 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AP004242.1-201ENST00000533701 349 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 MIR3618-201ENST00000580330 88 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AC012493.3-201ENST00000604494 112 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AL445493.3-201ENST00000619568 477 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AP003499.2-201ENST00000624100 483 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.37□□□□□ -2.19
COL6A3P12111 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
COL6A3P12111 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
COL6A3P12111 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.37□□□□□ -2.19
COL6A3P12111 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.37□□□□□ -2.19
COL6A3P12111 U8.1-201ENST00000362843 134 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL6A3P12111 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.37□□□□□ -2.19
COL6A3P12111 AC244636.1-201ENST00000421152 228 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 MRPS36P1-201ENST00000421291 307 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 LRRC34P2-201ENST00000514850 553 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AL158801.5-201ENST00000623123 465 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 SNORD114-23-201ENST00000363536 72 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 RNA5SP82-201ENST00000516707 92 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 HSPE1P4-201ENST00000550617 308 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 AC104307.1-201ENST00000616142 196 ntBASIC1.37□□□□□ -2.19
COL6A3P12111 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
COL6A3P12111 MIR1265-201ENST00000408444 86 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 MIR1197-201ENST00000408818 88 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 Y_RNA.644-201ENST00000459006 113 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 RPS27AP10-201ENST00000496103 208 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.36□□□□□ -2.19
COL6A3P12111 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.36□□□□□ -2.19
COL6A3P12111 AP001005.3-201ENST00000622049 129 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 VTRNA1-1-201ENST00000363120 99 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 SNRPEP2-201ENST00000397592 279 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 TATDN1P1-201ENST00000414123 891 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 HMGN2P20-201ENST00000437531 273 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 AL157827.1-201ENST00000447622 132 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
COL6A3P12111 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.36□□□□□ -2.19
COL6A3P12111 MIR8087-201ENST00000612745 78 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 AC007742.2-201ENST00000618226 398 ntBASIC1.36□□□□□ -2.19
COL6A3P12111 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
COL6A3P12111 RNU1-148P-201ENST00000384472 162 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 MIR1207-201ENST00000408249 87 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.35□□□□□ -2.19
COL6A3P12111 TRAV31-201ENST00000502780 342 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.35□□□□□ -2.19
COL6A3P12111 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.35□□□□□ -2.19
COL6A3P12111 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
COL6A3P12111 RNA5SP266-201ENST00000410273 108 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 AC109780.2-201ENST00000413467 845 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 AC109583.1-201ENST00000432156 268 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.35□□□□□ -2.19
COL6A3P12111 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.35□□□□□ -2.19
COL6A3P12111 RNU1-40P-201ENST00000516816 164 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 RNU1-97P-201ENST00000516872 164 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 RNU11-2P-201ENST00000516898 142 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.35□□□□□ -2.19
COL6A3P12111 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
COL6A3P12111 RPL17P12-201ENST00000413391 526 ntBASIC1.34□□□□□ -2.19
COL6A3P12111 Z85994.2-201ENST00000434327 452 ntBASIC1.34□□□□□ -2.19
COL6A3P12111 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.34□□□□□ -2.19
COL6A3P12111 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.34□□□□□ -2.19
COL6A3P12111 IMMP1LP2-201ENST00000552954 492 ntBASIC1.34□□□□□ -2.19
COL6A3P12111 MIR3973-201ENST00000579824 107 ntBASIC1.34□□□□□ -2.19
COL6A3P12111 AC017076.1-201ENST00000607613 578 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms