Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC0.78□□□□□ -2.28
APOBP04114 MIR3973-201ENST00000579824 107 ntBASIC0.78□□□□□ -2.28
APOBP04114 VN1R107P-201ENST00000601784 209 ntBASIC0.78□□□□□ -2.28
APOBP04114 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
APOBP04114 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
APOBP04114 OR1L1-202ENST00000373686 1083 ntBASIC0.78□□□□□ -2.28
APOBP04114 TRAPPC2P10-201ENST00000415662 323 ntBASIC0.78□□□□□ -2.28
APOBP04114 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.78□□□□□ -2.28
APOBP04114 AC023790.1-201ENST00000482174 347 ntBASIC0.78□□□□□ -2.28
APOBP04114 AP003033.1-201ENST00000527244 415 ntBASIC0.78□□□□□ -2.28
APOBP04114 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.78□□□□□ -2.29
APOBP04114 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
APOBP04114 MORF4L1P7-201ENST00000426038 703 ntBASIC0.77□□□□□ -2.29
APOBP04114 AC114973.1-201ENST00000429057 632 ntBASIC0.77□□□□□ -2.29
APOBP04114 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC0.77□□□□□ -2.29
APOBP04114 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC0.77□□□□□ -2.29
APOBP04114 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC0.77□□□□□ -2.29
APOBP04114 AC025918.2-201ENST00000558683 763 ntBASIC0.77□□□□□ -2.29
APOBP04114 AC083806.3-201ENST00000614016 455 ntBASIC0.77□□□□□ -2.29
APOBP04114 AC009541.1-201ENST00000438279 2662 ntBASIC0.77□□□□□ -2.29
APOBP04114 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
APOBP04114 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
APOBP04114 MIR193B-201ENST00000384907 83 ntBASIC0.77□□□□□ -2.29
APOBP04114 AL030996.1-201ENST00000411430 235 ntBASIC0.77□□□□□ -2.29
APOBP04114 HMGB1P49-201ENST00000418882 569 ntBASIC0.77□□□□□ -2.29
APOBP04114 RPS23P4-201ENST00000487908 423 ntBASIC0.77□□□□□ -2.29
APOBP04114 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC0.77□□□□□ -2.29
APOBP04114 U73023.1-201ENST00000603134 700 ntBASIC0.77□□□□□ -2.29
APOBP04114 AL133393.1-201ENST00000603277 287 ntBASIC0.77□□□□□ -2.29
APOBP04114 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
APOBP04114 RNU6-37P-201ENST00000362692 107 ntBASIC0.77□□□□□ -2.29
APOBP04114 RNU6-11P-201ENST00000364234 107 ntBASIC0.77□□□□□ -2.29
APOBP04114 AL078601.1-201ENST00000444542 271 ntBASIC0.77□□□□□ -2.29
APOBP04114 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC0.77□□□□□ -2.29
APOBP04114 RPS27AP10-201ENST00000496103 208 ntBASIC0.77□□□□□ -2.29
APOBP04114 AC096571.1-202ENST00000506634 735 ntBASIC0.77□□□□□ -2.29
APOBP04114 PRELID3BP4-201ENST00000515476 571 ntBASIC0.77□□□□□ -2.29
APOBP04114 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC0.77□□□□□ -2.29
APOBP04114 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC0.77□□□□□ -2.29
APOBP04114 DUXAP4-201ENST00000603046 613 ntBASIC0.77□□□□□ -2.29
APOBP04114 AC121333.1-201ENST00000567488 2709 ntBASIC0.77□□□□□ -2.29
APOBP04114 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
APOBP04114 OR5AQ1P-202ENST00000641257 1534 ntBASIC0.77□□□□□ -2.29
APOBP04114 RNA5SP62-201ENST00000363457 110 ntBASIC0.77□□□□□ -2.29
APOBP04114 RNA5SP363-201ENST00000365072 115 ntBASIC0.77□□□□□ -2.29
APOBP04114 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
APOBP04114 AC073264.1-201ENST00000411508 416 ntBASIC0.77□□□□□ -2.29
APOBP04114 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC0.77□□□□□ -2.29
APOBP04114 FO393415.2-201ENST00000480085 343 ntBASIC0.77□□□□□ -2.29
APOBP04114 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC0.77□□□□□ -2.29
APOBP04114 NPM1P52-201ENST00000518264 846 ntBASIC0.77□□□□□ -2.29
APOBP04114 CENPCP1-201ENST00000533085 2578 ntBASIC0.76□□□□□ -2.29
APOBP04114 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC0.76□□□□□ -2.29
APOBP04114 AC114546.3-201ENST00000623582 1734 ntBASIC0.76□□□□□ -2.29
APOBP04114 MIR524-201ENST00000385242 87 ntBASIC0.76□□□□□ -2.29
APOBP04114 HMGN1P14-201ENST00000412459 517 ntBASIC0.76□□□□□ -2.29
APOBP04114 AIMP1P2-201ENST00000425294 312 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC0.76□□□□□ -2.29
APOBP04114 AC092902.1-201ENST00000486999 259 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.76□□□□□ -2.29
APOBP04114 AC006270.2-201ENST00000578523 652 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC0.76□□□□□ -2.29
APOBP04114 AL109653.1-201ENST00000603091 248 ntBASIC0.76□□□□□ -2.29
APOBP04114 AL359851.1-201ENST00000569460 4997 ntBASIC0.76□□□□□ -2.29
APOBP04114 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
APOBP04114 TXNP7-201ENST00000406296 293 ntBASIC0.76□□□□□ -2.29
APOBP04114 RN7SKP200-201ENST00000410564 320 ntBASIC0.76□□□□□ -2.29
APOBP04114 VN1R96P-201ENST00000446052 858 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC012170.1-201ENST00000495139 359 ntBASIC0.76□□□□□ -2.29
APOBP04114 RNU2-44P-201ENST00000516795 194 ntBASIC0.76□□□□□ -2.29
APOBP04114 MKKS-204ENST00000639674 192 ntBASIC0.76□□□□□ -2.29
APOBP04114 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC0.76□□□□□ -2.29
APOBP04114 RNA5SP457-201ENST00000363657 124 ntBASIC0.76□□□□□ -2.29
APOBP04114 MIR532-201ENST00000385025 91 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC0.76□□□□□ -2.29
APOBP04114 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC0.76□□□□□ -2.29
APOBP04114 AC012181.1-201ENST00000479895 423 ntBASIC0.76□□□□□ -2.29
APOBP04114 SNORD116-26-201ENST00000516006 96 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC087808.1-201ENST00000520501 361 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC0.76□□□□□ -2.29
APOBP04114 AC139103.1-201ENST00000534696 1030 ntBASIC0.76□□□□□ -2.29
APOBP04114 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC0.76□□□□□ -2.29
APOBP04114 AC008962.1-201ENST00000605729 304 ntBASIC0.76□□□□□ -2.29
APOBP04114 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
APOBP04114 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC0.76□□□□□ -2.29
APOBP04114 UBE2FP3-201ENST00000436366 524 ntBASIC0.76□□□□□ -2.29
APOBP04114 SNRPGP13-201ENST00000442212 177 ntBASIC0.76□□□□□ -2.29
APOBP04114 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC0.76□□□□□ -2.29
APOBP04114 AC092451.2-201ENST00000538746 658 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC013553.2-201ENST00000604244 589 ntBASIC0.76□□□□□ -2.29
APOBP04114 AC103810.8-201ENST00000607347 118 ntBASIC0.76□□□□□ -2.29
APOBP04114 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.76□□□□□ -2.29
APOBP04114 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.76□□□□□ -2.29
APOBP04114 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
APOBP04114 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
APOBP04114 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC0.75□□□□□ -2.29
APOBP04114 SNORA70.7-201ENST00000384159 133 ntBASIC0.75□□□□□ -2.29
APOBP04114 AC113155.1-201ENST00000511141 769 ntBASIC0.75□□□□□ -2.29
APOBP04114 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.75□□□□□ -2.29
APOBP04114 MIR7974-201ENST00000615835 79 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms