Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 Y_RNA.280-201ENST00000364765 112 ntBASIC1.13□□□□□ -2.23
COL6A5A8TX70 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
COL6A5A8TX70 RPL19P1-201ENST00000411635 428 ntBASIC1.13□□□□□ -2.23
COL6A5A8TX70 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC1.13□□□□□ -2.23
COL6A5A8TX70 ARL5AP2-201ENST00000444698 533 ntBASIC1.13□□□□□ -2.23
COL6A5A8TX70 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.13□□□□□ -2.23
COL6A5A8TX70 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.13□□□□□ -2.23
COL6A5A8TX70 SNORD116-26-201ENST00000516006 96 ntBASIC1.13□□□□□ -2.23
COL6A5A8TX70 AC024614.2-201ENST00000577584 372 ntBASIC1.13□□□□□ -2.23
COL6A5A8TX70 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.13□□□□□ -2.23
COL6A5A8TX70 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.13□□□□□ -2.23
COL6A5A8TX70 AL449363.1-201ENST00000617815 186 ntBASIC1.13□□□□□ -2.23
COL6A5A8TX70 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
COL6A5A8TX70 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
COL6A5A8TX70 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 RNU1-133P-201ENST00000364867 167 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 RNU6-146P-201ENST00000384602 108 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 RNA5SP354-201ENST00000391247 136 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 AC005517.2-201ENST00000424673 553 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 AL078601.1-201ENST00000444542 271 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 OR51B8P-201ENST00000449892 769 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 AC104308.1-201ENST00000454621 333 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 APOOP3-201ENST00000536787 586 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 AC090525.3-201ENST00000605601 189 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 AC092159.4-201ENST00000624944 550 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 RNU6-670P-201ENST00000364312 104 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
COL6A5A8TX70 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 SEM1P1-201ENST00000506694 209 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 Y_RNA.675-201ENST00000516389 149 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 SNORA31.11-201ENST00000516528 139 ntBASIC1.12□□□□□ -2.23
COL6A5A8TX70 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A5A8TX70 MTND5P9-201ENST00000503854 1755 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.11□□□□□ -2.23
COL6A5A8TX70 PABPC1P9-201ENST00000426076 1612 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.11□□□□□ -2.23
COL6A5A8TX70 RNU4-91P-201ENST00000364778 135 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC009302.1-201ENST00000417147 390 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC092832.1-201ENST00000422934 400 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 CKS1BP5-201ENST00000434172 273 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 RPS26P21-201ENST00000475397 348 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC078918.1-201ENST00000498515 228 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC012493.3-201ENST00000604494 112 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL6A5A8TX70 MTND4P31-201ENST00000425607 1343 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC008669.1-201ENST00000565823 2178 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
COL6A5A8TX70 TATDN1P1-201ENST00000414123 891 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 ZNF965P-201ENST00000432501 817 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.11□□□□□ -2.23
COL6A5A8TX70 IMMP1LP2-201ENST00000552954 492 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC034102.8-201ENST00000615146 484 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
COL6A5A8TX70 AC135776.4-201ENST00000624300 1904 ntBASIC1.11□□□□□ -2.23
COL6A5A8TX70 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL6A5A8TX70 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
COL6A5A8TX70 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 SNORA16.1-201ENST00000364597 132 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
COL6A5A8TX70 RPL34P26-201ENST00000445636 354 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC243772.1-201ENST00000451620 410 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 RNU1-40P-201ENST00000516816 164 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 RNU1-97P-201ENST00000516872 164 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC239860.2-201ENST00000525886 270 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 AL161713.1-201ENST00000555538 145 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 HSPE1P14-201ENST00000605812 302 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 uc_338.12-201ENST00000616344 181 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL6A5A8TX70 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL6A5A8TX70 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 ARPC3P2-201ENST00000457786 533 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC012170.1-201ENST00000495139 359 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 HMGB3P15-201ENST00000507326 574 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC084851.1-201ENST00000529105 249 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.1□□□□□ -2.23
COL6A5A8TX70 AC139103.1-201ENST00000534696 1030 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 TRAV28-201ENST00000557548 323 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 MIR8087-201ENST00000612745 78 ntBASIC1.1□□□□□ -2.23
COL6A5A8TX70 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
COL6A5A8TX70 SGO1P2-201ENST00000429458 1589 ntBASIC1.09□□□□□ -2.23
COL6A5A8TX70 RNU6-461P-201ENST00000364195 107 ntBASIC1.09□□□□□ -2.23
COL6A5A8TX70 SNORD56.5-201ENST00000364281 72 ntBASIC1.09□□□□□ -2.23
COL6A5A8TX70 RNU6-1305P-201ENST00000364353 104 ntBASIC1.09□□□□□ -2.23
COL6A5A8TX70 SNORA51.10-201ENST00000384418 136 ntBASIC1.09□□□□□ -2.23
COL6A5A8TX70 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
COL6A5A8TX70 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.09□□□□□ -2.23
COL6A5A8TX70 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.09□□□□□ -2.23
COL6A5A8TX70 AL021397.1-201ENST00000451806 248 ntBASIC1.09□□□□□ -2.23
COL6A5A8TX70 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms