Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 USP9YP32-201ENST00000452432 430 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 AL138752.1-201ENST00000452964 351 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 RN7SKP260-201ENST00000516907 149 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 RNA5SP230-201ENST00000517039 122 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 RN7SKP147-201ENST00000517154 244 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 AC022868.1-201ENST00000517767 391 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 HNRNPCP4-201ENST00000571636 900 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 AC010201.1-201ENST00000605051 540 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 AL121917.1-203ENST00000605534 577 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 MIR1244-1-201ENST00000612829 85 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 SNORD39.4-201ENST00000620099 78 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 MIR1244-3-201ENST00000635744 85 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 MIR1244-2-201ENST00000636449 85 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 MIR1244-4-202ENST00000636813 85 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ZNF285B-201ENST00000561698 1767 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ADAM5-202ENST00000399789 1942 ntBASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP3Q9Y6I4 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC093671.1-201ENST00000624981 2929 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC004656.1-201ENST00000568479 4951 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SNORD81.1-201ENST00000363064 77 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 RN7SKP113-201ENST00000363891 295 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SNORD27-201ENST00000363981 72 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 RNU6-338P-201ENST00000383888 105 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 RNU6-662P-201ENST00000384253 104 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.462-201ENST00000384268 102 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.592-201ENST00000410274 109 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 CYCSP33-201ENST00000414485 327 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 VTI1BP4-201ENST00000427516 527 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC092423.1-201ENST00000430165 186 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 BX323845.1-201ENST00000432417 179 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 EIF4A1P11-201ENST00000451239 222 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 RN7SL443P-201ENST00000464331 290 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC093270.2-201ENST00000486157 792 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 RN7SL97P-201ENST00000486780 299 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 MIR4660-201ENST00000583549 74 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 MIR4691-201ENST00000583764 85 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC004792.1-201ENST00000614523 137 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AP001282.2-201ENST00000616149 309 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 AC107027.3-201ENST00000565095 3473 ntBASIC5.35□□□□□ -1.55
USP3Q9Y6I4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP3Q9Y6I4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AL391987.6-201ENST00000305671 199 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.27-201ENST00000362540 103 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 SNORA2.3-201ENST00000383920 135 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 U3.32-201ENST00000408116 212 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 snoU13.3-201ENST00000459441 104 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 U8.21-201ENST00000459536 136 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 RPL30P10-201ENST00000488148 337 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 COX6B1P5-201ENST00000509843 249 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AC130289.1-201ENST00000577321 73 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 MIR5696-201ENST00000578474 85 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AC105254.2-201ENST00000603636 436 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 BX284668.6-201ENST00000606899 438 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 AC034102.8-201ENST00000615146 484 ntBASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms