Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AL109918.3-201ENST00000603072 338 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC008162.1-201ENST00000604718 254 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AL670379.4-201ENST00000605279 254 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 MIR6758-201ENST00000620653 63 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC011978.2-201ENST00000569835 2054 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 EXOC5P1-201ENST00000510543 1969 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 ZNF137P-201ENST00000456718 1920 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 GABPAP-201ENST00000419271 1356 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AL445487.1-201ENST00000415694 1580 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AL672167.1-203ENST00000641299 2975 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC126755.2-208ENST00000327792 462 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC138969.1-213ENST00000331436 462 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-946P-201ENST00000383878 107 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-178P-201ENST00000384631 104 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RNU11-4P-201ENST00000391149 133 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RNA5SP397-201ENST00000391323 118 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC093151.1-201ENST00000427711 313 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RPL23AP1-201ENST00000428990 471 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC236972.1-201ENST00000433225 199 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC007967.1-201ENST00000455422 1159 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RPL5P30-201ENST00000465511 891 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC021146.3-201ENST00000511911 260 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC108043.1-201ENST00000512696 574 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-1332P-201ENST00000516666 104 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 OR8R1P-201ENST00000543943 764 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 MIR5096-201ENST00000583713 70 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC018462.2-201ENST00000605375 395 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AL589994.2-201ENST00000621124 579 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 AC139713.2-214ENST00000642059 1811 ntBASIC5.81□□□□□ -1.48
CHMP3Q9Y3E7 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-450P-201ENST00000364654 107 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 Z98745.1-201ENST00000402553 494 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-387P-201ENST00000411331 105 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RPS15AP40-201ENST00000419621 391 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 BTF3P6-201ENST00000448054 499 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 AC087884.1-201ENST00000469738 328 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-470P-201ENST00000515954 104 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-1069P-201ENST00000516612 133 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-388P-201ENST00000517012 105 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-389P-201ENST00000517048 105 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 MIR4277-201ENST00000578298 84 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 PRR13P7-201ENST00000605538 430 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 AC009570.1-201ENST00000609599 745 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 U2.17-201ENST00000611454 95 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 AC103710.2-202ENST00000641454 2853 ntBASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.8□□□□□ -1.48
CHMP3Q9Y3E7 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 SALL4P2-201ENST00000423288 2910 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AL158163.1-201ENST00000603915 1649 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 SNORD51-201ENST00000384320 80 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-1026P-201ENST00000384465 108 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 U3.22-201ENST00000391120 215 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AL109755.1-201ENST00000401791 649 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-847P-201ENST00000411115 108 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 RPL21P24-201ENST00000413752 448 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 UBE2FP1-201ENST00000416536 447 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 RPL21P109-201ENST00000422213 475 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 CEACAMP1-201ENST00000434624 1035 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 HIGD1AP11-201ENST00000438361 280 ntBASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP3Q9Y3E7 GAPDHP27-201ENST00000447427 1020 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms