Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 MIR3672-201ENST00000584290 82 ntBASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 AF038458.1-201ENST00000588406 262 ntBASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 AC012669.1-201ENST00000603209 283 ntBASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 AC243312.2-201ENST00000623340 601 ntBASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 AC006065.5-201ENST00000623427 349 ntBASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.59□□□□□ -1.51
BRPF3Q9ULD4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC5.59□□□□□ -1.52
BRPF3Q9ULD4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.59□□□□□ -1.52
BRPF3Q9ULD4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
BRPF3Q9ULD4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 Y_RNA.445-201ENST00000384168 102 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 RNU6-1127P-201ENST00000384580 107 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 MIR135A2-201ENST00000384854 100 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 RNU1-82P-201ENST00000390851 165 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 MTCYBP4-201ENST00000401524 249 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC016712.1-201ENST00000431088 378 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 RPS15AP27-201ENST00000449183 343 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AL163540.1-201ENST00000485382 386 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC007016.1-201ENST00000512110 244 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 OR7H2P-201ENST00000513483 306 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 RNU6-189P-201ENST00000516120 101 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 RNA5SP454-201ENST00000517231 127 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC005255.1-201ENST00000593748 216 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 DPPA3P3-201ENST00000603842 430 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AL670379.10-201ENST00000604330 253 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AL670379.9-201ENST00000605428 253 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 DUSP12P1-201ENST00000612874 516 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 AC103705.1-201ENST00000619013 241 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 OR52H1-202ENST00000641796 1061 ntBASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
BRPF3Q9ULD4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 RNU6-254P-201ENST00000363377 107 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 RNU6-701P-201ENST00000384059 107 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 RNA5SP104-201ENST00000410989 118 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AL139396.1-201ENST00000421137 167 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 snoU13.3-201ENST00000459441 104 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AC078817.1-201ENST00000492623 435 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 RNU6-1095P-201ENST00000516148 108 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AC105129.1-201ENST00000560250 297 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AL137003.2-201ENST00000606924 2538 ntBASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.57□□□□□ -1.52
BRPF3Q9ULD4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AL391684.1-202ENST00000641293 1636 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 RPL32P3-201ENST00000359025 275 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 SNORA33.2-201ENST00000365413 134 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 RNA5SP219-201ENST00000390940 113 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AL590762.2-201ENST00000395798 571 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AC245054.2-201ENST00000415639 319 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 RPS23P10-201ENST00000416185 486 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AC099677.1-201ENST00000420575 175 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 FABP5P14-201ENST00000437273 393 ntBASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.56□□□□□ -1.52
BRPF3Q9ULD4 FABP5P13-201ENST00000452144 328 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms