Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AL450472.3-201ENST00000615578 367 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC099506.2-201ENST00000623074 221 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC009812.4-201ENST00000569134 1805 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC006378.2-201ENST00000623178 2476 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 Y_RNA.97-201ENST00000363094 102 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 SNORA54-201ENST00000384281 123 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 RNU5A-2P-201ENST00000384337 116 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 SNORA48.8-201ENST00000391324 134 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 RPS7P13-201ENST00000413955 498 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 RPL23AP83-201ENST00000434984 473 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 THAP5P1-201ENST00000439089 262 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 FAM103A2P-201ENST00000444122 354 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AL590664.1-201ENST00000448065 339 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 RPL21P8-201ENST00000465083 535 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 RPL30P6-201ENST00000475925 342 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AC103783.1-201ENST00000520506 373 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 FAM60DP-201ENST00000524174 632 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AL603755.1-201ENST00000619504 163 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 Z99129.2-201ENST00000619967 314 ntBASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CPSF3Q9UKF6 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 SNORD15B-201ENST00000384714 146 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 U3.20-201ENST00000390909 217 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 RNU1-101P-201ENST00000391171 127 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 RPS4XP3-201ENST00000398541 413 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 RNA5SP38-201ENST00000410750 119 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 CCDC58P2-201ENST00000417131 366 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 MTND2P18-201ENST00000419962 1030 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC024082.2-201ENST00000434771 238 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AL831737.1-201ENST00000441288 271 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 RPS12P18-201ENST00000442381 270 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AL671855.1-201ENST00000446875 1203 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC016696.1-201ENST00000446949 318 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC234775.1-201ENST00000454247 670 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC092185.1-201ENST00000491371 97 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC111000.2-201ENST00000507775 550 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 CBX3P3-201ENST00000508108 532 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC022483.1-201ENST00000514020 567 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC008885.1-201ENST00000514930 301 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC125611.2-201ENST00000551907 647 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 MIR4307-201ENST00000582802 84 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 MTCYBP22-201ENST00000603788 447 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AP002826.1-201ENST00000608835 315 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 AC122133.1-201ENST00000613964 233 ntBASIC3.37□□□□□ -1.87
CPSF3Q9UKF6 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 CCT4P2-201ENST00000233836 1548 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 MTCO1P9-201ENST00000505577 1534 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 RNU6-1078P-201ENST00000364522 103 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 SNORA14A-201ENST00000364773 135 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 Y_RNA.560-201ENST00000384689 102 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AL354719.1-201ENST00000406535 843 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC090774.1-201ENST00000435925 246 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 ZNF114P1-201ENST00000453500 292 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 RN7SL442P-201ENST00000473804 320 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC068724.1-201ENST00000487100 792 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 201.7 ms