Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 MIR6733-201ENST00000635723 61 ntBASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS54Q9P1Q0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 FAM133CP-201ENST00000332869 704 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 SNORA4.1-201ENST00000364263 144 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 PIGPP2-201ENST00000411569 458 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC093151.1-201ENST00000427711 313 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 MTND1P32-201ENST00000433043 938 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AL117351.1-201ENST00000438864 766 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 THAP5P1-201ENST00000439089 262 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 snoU13.8-201ENST00000458890 104 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 DSTNP2-201ENST00000504533 515 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 RNU5A-4P-201ENST00000516588 111 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC103783.1-201ENST00000520506 373 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 MIR4760-201ENST00000585040 80 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 VN1R92P-201ENST00000598511 928 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC008277.2-201ENST00000605196 797 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC007619.2-201ENST00000605743 379 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC069234.5-201ENST00000611056 416 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 MIR7106-201ENST00000612419 65 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AC011330.2-201ENST00000621680 635 ntBASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS54Q9P1Q0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 RNU6-1207P-201ENST00000384343 107 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AL360182.1-201ENST00000397433 468 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 NDUFB4P4-201ENST00000404822 243 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 HMGB1P49-201ENST00000418882 569 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 MTCO2P21-201ENST00000419780 677 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 SETP8-201ENST00000435341 628 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 Z73417.1-201ENST00000447373 778 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 USP9YP10-201ENST00000454868 628 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC034159.1-201ENST00000513885 583 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 RNU6-528P-201ENST00000516926 100 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC125611.2-201ENST00000551907 647 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC087465.1-201ENST00000560574 245 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 MIR4635-201ENST00000583759 79 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 ELOCP29-201ENST00000588193 334 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AL596327.1-201ENST00000603629 213 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AL450472.3-201ENST00000615578 367 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AP002782.1-201ENST00000623107 614 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 CR381653.2-201ENST00000624041 768 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 AC011477.1-204ENST00000623416 1325 ntBASIC3.09□□□□□ -1.91
VPS54Q9P1Q0 DDX43P2-201ENST00000604753 1354 ntBASIC3.09□□□□□ -1.92
VPS54Q9P1Q0 CUL1P1-201ENST00000509510 2425 ntBASIC3.09□□□□□ -1.92
VPS54Q9P1Q0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC090740.1-201ENST00000623193 2262 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL365361.1-201ENST00000566942 3481 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL161781.1-201ENST00000354277 403 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL122016.1-201ENST00000403365 367 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 FAT1P1-201ENST00000406588 507 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 SNORD88.1-201ENST00000408684 91 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 RNU2-52P-201ENST00000410680 190 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC091390.3-201ENST00000426478 338 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 MTATP6P4-201ENST00000427725 675 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 TXNL1P1-201ENST00000429528 554 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 OR4K11P-201ENST00000431829 904 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL592447.1-201ENST00000447592 540 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC234775.1-201ENST00000454247 670 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms