Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC087359.1-201ENST00000508335 1740 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AL161781.1-201ENST00000354277 403 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 TAF9BP2-201ENST00000400856 499 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AL450338.1-201ENST00000407987 512 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC010385.1-201ENST00000412374 256 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 ZNF965P-201ENST00000432501 817 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 MTCYBP45-201ENST00000435243 565 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 USP9YP15-201ENST00000442391 422 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC007677.1-201ENST00000445757 515 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 MTCO1P31-201ENST00000506355 492 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC093770.1-201ENST00000511559 571 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC087481.2-201ENST00000565492 330 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC090116.1-201ENST00000615679 446 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC099063.3-201ENST00000642066 185 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 SDAD1P2-201ENST00000441308 2028 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 RNU6-252P-201ENST00000363232 107 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 RNU1-105P-201ENST00000363470 161 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 DPPA3P1-201ENST00000448050 469 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC010099.1-201ENST00000455434 375 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 snoU13.28-201ENST00000459235 104 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 OR52A4P-202ENST00000481634 799 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 CDC42P4-201ENST00000510507 563 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 MTCO3P44-201ENST00000510977 541 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 RNA5SP364-201ENST00000516938 78 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC009268.1-201ENST00000561352 1203 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC023824.2-201ENST00000566185 400 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC022387.2-201ENST00000604050 448 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC024560.3-201ENST00000608482 349 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 AC021851.1-201ENST00000608537 1082 ntBASIC1.67□□□□□ -2.14
SCN3AQ9NY46 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
SCN3AQ9NY46 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 CYCSP49-201ENST00000420810 319 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 UBE2D3P2-201ENST00000424409 445 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 UBE2V1P6-201ENST00000430840 422 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 SSXP1-201ENST00000453640 473 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC234775.1-201ENST00000454247 670 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC083923.1-201ENST00000523708 376 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC011611.5-201ENST00000552477 578 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 MIR6895-201ENST00000613497 78 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC084768.2-201ENST00000622736 221 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AP003400.6-201ENST00000624698 740 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AP005901.5-201ENST00000545779 1796 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 RNU6-1072P-201ENST00000384703 107 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 RNU6-443P-201ENST00000384780 107 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 MTND1P23-201ENST00000416931 372 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 MTND1P33-201ENST00000446251 917 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 RNU6-295P-201ENST00000516901 104 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 ATP5F1P5-201ENST00000526403 760 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 SUB1P3-201ENST00000564581 315 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC074051.3-201ENST00000570238 358 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AL136363.1-201ENST00000605349 337 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC018926.3-201ENST00000618841 406 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN3AQ9NY46 OR4G2P-202ENST00000641004 1759 ntBASIC1.66□□□□□ -2.14
SCN3AQ9NY46 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SCN3AQ9NY46 AL596028.1-201ENST00000326971 197 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 RN7SKP101-201ENST00000411376 320 ntBASIC1.65□□□□□ -2.15
SCN3AQ9NY46 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms