Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RIOK3P1-201ENST00000418778 1528 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 EXOC5P1-201ENST00000510543 1969 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC067945.1-201ENST00000342609 618 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 Y_RNA.86-201ENST00000363020 111 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 SNORD35B-201ENST00000363660 87 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 RNU6-960P-201ENST00000364056 120 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 HDGFP1-201ENST00000405943 252 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 RPL7AP73-201ENST00000413490 353 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC012498.1-201ENST00000424037 437 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 ZNF863P-201ENST00000426746 417 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC093106.2-201ENST00000428212 385 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 ATP5JP1-201ENST00000431631 322 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC098614.3-201ENST00000438957 440 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 RNU7-182P-201ENST00000459009 62 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 RPL23AP2-201ENST00000471227 466 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC091951.2-201ENST00000500762 203 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 MTCO2P30-201ENST00000503662 364 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC114786.4-201ENST00000508771 728 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 SNORD60.2-201ENST00000516883 86 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC008489.1-201ENST00000524271 483 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 SUB1P1-201ENST00000524415 382 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AP004371.1-201ENST00000525240 214 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC091516.1-201ENST00000549191 703 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC015917.1-201ENST00000579654 510 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC024619.4-201ENST00000580924 316 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 MIR4444-1-201ENST00000581696 74 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 MIR4444-2-201ENST00000584390 74 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC069234.5-201ENST00000611056 416 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 Y_RNA.804-201ENST00000615262 101 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC104260.1-201ENST00000616660 539 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC015967.1-201ENST00000619893 476 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC067931.1-201ENST00000624190 671 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 MTND5P17-201ENST00000418405 1603 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 BDP1P-201ENST00000582658 1990 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AL365440.1-201ENST00000436135 2167 ntBASIC4.19□□□□□ -1.74
TDP1Q9NUW8 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 MTND4P12-201ENST00000498999 1377 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 NACAP2-201ENST00000318548 624 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 CBX3P1-201ENST00000325243 554 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 Y_RNA.279-201ENST00000364763 95 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 RNA5SP171-201ENST00000391071 115 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC110754.1-201ENST00000399740 601 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AL590704.1-201ENST00000402856 794 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC114491.1-201ENST00000416095 246 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC018630.2-202ENST00000422992 927 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC079780.1-201ENST00000428259 207 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AL445584.1-201ENST00000431451 330 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 RPL36AP53-201ENST00000432891 316 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 RPL36AP6-201ENST00000435770 321 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC073587.1-201ENST00000447093 876 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 RPL39P36-201ENST00000490784 156 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 EIF4EP3-201ENST00000498782 656 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC046134.1-201ENST00000514454 666 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 RNU7-143P-201ENST00000516781 65 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 OR5B19P-201ENST00000531766 928 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 OR5AL2P-201ENST00000532185 920 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms