Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 MTCO1P9-201ENST00000505577 1534 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 RNU6-223P-201ENST00000362830 107 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 SNORD116-1-201ENST00000384335 95 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 SNORA26.8-201ENST00000391306 124 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL021407.1-201ENST00000404531 386 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL356968.1-201ENST00000416622 474 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 RPL23AP82-202ENST00000427528 469 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC090774.1-201ENST00000435925 246 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC118469.1-201ENST00000442943 488 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 EPS15P1-201ENST00000448836 336 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 RPL31P3-201ENST00000458430 332 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 CENPBD1P1-201ENST00000464061 469 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC109925.1-201ENST00000478069 331 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC006445.1-201ENST00000491925 405 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC112204.1-201ENST00000502591 103 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 MLLT10P2-201ENST00000506434 249 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 IGHV3-76-201ENST00000522465 295 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 TGIF1P1-201ENST00000558095 802 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 FAM60BP-201ENST00000578364 658 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL022099.1-201ENST00000604551 712 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL137843.1-201ENST00000605078 385 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL031775.1-201ENST00000607014 887 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC138749.5-201ENST00000611461 208 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC116165.2-201ENST00000616705 206 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AL356321.1-201ENST00000621360 228 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 PLCE1P1-201ENST00000622094 305 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC092628.2-201ENST00000622492 339 ntBASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC3Q9BQI4 AC118273.1-201ENST00000525324 3006 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AL672296.1-201ENST00000427780 2158 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ELL2P3-201ENST00000457883 1602 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ZNF826P-207ENST00000622273 1910 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC002546.1-201ENST00000588041 2504 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 RNU6-173P-201ENST00000364215 104 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 RNU6-637P-201ENST00000384050 107 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 RNU6-114P-201ENST00000384704 105 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 RPL7P25-201ENST00000404151 721 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC233728.2-201ENST00000425348 757 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 MTATP6P4-201ENST00000427725 675 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 THAP5P1-201ENST00000439089 262 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 MTND2P22-201ENST00000444325 1033 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC234775.1-201ENST00000454247 670 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 S100A11P2-201ENST00000467589 312 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC020893.1-201ENST00000502452 580 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC004062.1-201ENST00000509926 645 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ARL2BPP6-201ENST00000512757 439 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 FABP5P5-201ENST00000515537 406 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 RNA5SP468-201ENST00000516782 93 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 RN7SKP60-201ENST00000516985 239 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC025881.1-201ENST00000518851 512 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC093331.1-201ENST00000521474 169 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 MIR4425-201ENST00000580572 84 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AL451007.1-201ENST00000595491 289 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC012065.4-201ENST00000602445 679 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC093838.1-201ENST00000613014 469 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 AC012150.2-201ENST00000621300 544 ntBASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC3Q9BQI4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms