Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SEPT7P9-203ENST00000604116 343 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC007256.1-201ENST00000392253 2765 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 RNU6-115P-201ENST00000364310 107 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 RNA5SP127-201ENST00000411051 133 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC008850.1-201ENST00000427546 362 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC090515.1-201ENST00000465295 476 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.21□□□□□ -2.22
VPS13AQ96RL7 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.21□□□□□ -2.22
VPS13AQ96RL7 DNAJC8P1-201ENST00000554535 372 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
VPS13AQ96RL7 Y_RNA.85-201ENST00000363014 111 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AL445183.3-201ENST00000414168 502 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AL357078.2-201ENST00000416486 427 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC109583.1-201ENST00000432156 268 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC068338.1-201ENST00000565567 176 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AL020996.3-201ENST00000606617 222 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AP000676.4-201ENST00000624659 623 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC107032.1-201ENST00000485945 480 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AC025263.3-201ENST00000622965 1396 ntBASIC1.2□□□□□ -2.22
VPS13AQ96RL7 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AC096571.1-202ENST00000506634 735 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AP004242.1-201ENST00000533701 349 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AC016877.3-201ENST00000606778 504 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AC006338.1-201ENST00000618453 749 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AP002907.1-201ENST00000606361 1430 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 SNORA18.2-201ENST00000383865 132 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 RNU6-35P-201ENST00000384530 107 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 RNA5SP354-201ENST00000391247 136 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.19□□□□□ -2.22
VPS13AQ96RL7 AL159169.2-201ENST00000610061 1269 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 RNF6P1-201ENST00000444889 1784 ntBASIC1.19□□□□□ -2.22
VPS13AQ96RL7 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
VPS13AQ96RL7 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AL590233.1-201ENST00000430017 456 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AC006270.2-201ENST00000578523 652 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 XIAPP3-201ENST00000312918 795 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 Y_RNA.60-201ENST00000362831 98 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 DPPA2P1-201ENST00000428060 556 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AC110792.2-201ENST00000510278 224 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 VN1R107P-201ENST00000601784 209 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AC123912.5-201ENST00000605470 343 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AL445493.3-201ENST00000619568 477 ntBASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
VPS13AQ96RL7 AC090740.1-201ENST00000623193 2262 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 Z85994.2-201ENST00000434327 452 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC023424.2-201ENST00000493479 777 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC010928.2-201ENST00000588017 287 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AL590095.2-201ENST00000604136 117 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AL109933.3-201ENST00000619095 188 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC244636.1-201ENST00000421152 228 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC018630.2-202ENST00000422992 927 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 RPS15AP7-201ENST00000439294 405 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC006483.1-201ENST00000487308 313 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC1.17□□□□□ -2.22
VPS13AQ96RL7 RNU4-60P-201ENST00000517239 135 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 AC007115.1-201ENST00000546853 234 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 U73023.1-201ENST00000603134 700 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 ZNF734P-201ENST00000419494 1534 ntBASIC1.17□□□□□ -2.22
VPS13AQ96RL7 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
VPS13AQ96RL7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.16□□□□□ -2.22
VPS13AQ96RL7 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.16□□□□□ -2.22
VPS13AQ96RL7 AC121758.2-201ENST00000553271 193 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
VPS13AQ96RL7 AC116618.1-201ENST00000634617 774 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 AL354685.2-201ENST00000448218 1447 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 CENPCP1-201ENST00000533085 2578 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 MIR365B-201ENST00000362317 111 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 USP9YP33-201ENST00000412220 421 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 USP9YP35-201ENST00000435696 412 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 MTCYBP37-201ENST00000510642 1133 ntBASIC1.16□□□□□ -2.22
VPS13AQ96RL7 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC1.16□□□□□ -2.22
VPS13AQ96RL7 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms