Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC010587.2-201ENST00000511727 448 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 MTATP6P9-201ENST00000515039 680 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 RNU6-56P-201ENST00000516986 93 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 SNORA31.21-201ENST00000517180 77 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 RNU6-840P-201ENST00000517275 65 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 NBEAP1-201ENST00000554452 979 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC068135.2-201ENST00000569293 1028 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 MIR3908-201ENST00000579798 126 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 LARP7P3-201ENST00000579888 337 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC083760.1-201ENST00000589621 670 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC008739.2-201ENST00000597006 317 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 DUXAP4-201ENST00000603046 613 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AL139022.2-201ENST00000606934 443 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC073308.1-201ENST00000623696 305 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC079228.1-201ENST00000624774 1049 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC007785.2-201ENST00000598627 1916 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC092447.10-201ENST00000620607 1652 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 RNU4-92P-201ENST00000363783 136 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 SNORD21-201ENST00000383953 95 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 RNA5SP344-201ENST00000411081 104 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 NANOGP5-201ENST00000424456 877 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 USP9YP24-201ENST00000434374 697 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AL831737.1-201ENST00000441288 271 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 USP9YP17-201ENST00000444617 696 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 DDX3P2-201ENST00000446138 111 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 MTND1P9-201ENST00000453775 944 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC092155.2-201ENST00000454675 477 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 RPS20P20-201ENST00000460498 340 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 SNORA31.26-201ENST00000517250 137 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AP002748.2-201ENST00000528671 348 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AL355836.1-201ENST00000555951 870 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC090888.1-201ENST00000561335 1141 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC080013.3-201ENST00000606839 578 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC103710.4-201ENST00000609301 899 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC009268.2-201ENST00000621925 457 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC002064.3-201ENST00000623448 346 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC019226.1-201ENST00000625666 515 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 MIR4275-201ENST00000636486 87 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 FAM35CP-201ENST00000554755 2470 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 AC096644.4-201ENST00000563417 2912 ntBASIC3.21□□□□□ -1.9
CCDC43Q96MW1 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC43Q96MW1 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC010680.1-201ENST00000590024 3590 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 ZNF29P-201ENST00000225587 168 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 U3.26-201ENST00000391236 204 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 RPL7P8-201ENST00000411964 730 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC099548.1-201ENST00000421443 426 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 MTCO2P23-201ENST00000425216 680 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC091390.3-201ENST00000426478 338 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 MTCO2P20-201ENST00000437339 673 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC025750.2-201ENST00000442609 450 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 PAXBP1P1-201ENST00000449315 447 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 USP9YP10-201ENST00000454868 628 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 ATG12P2-201ENST00000456830 416 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC092798.1-201ENST00000458542 409 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 RPS26P21-201ENST00000475397 348 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC233702.1-201ENST00000482905 502 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 UBE2V1P12-201ENST00000503954 474 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 RPL23AP84-201ENST00000571193 464 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC022662.1-201ENST00000580252 331 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC024153.1-201ENST00000603103 365 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 MIR7106-201ENST00000612419 65 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC099063.3-201ENST00000642066 185 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AP000776.1-201ENST00000530032 1663 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 AC092435.3-201ENST00000565538 3654 ntBASIC3.2□□□□□ -1.9
CCDC43Q96MW1 DDX10P1-201ENST00000448545 1933 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL138713.1-201ENST00000624026 2130 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms