Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC068587.2-201ENST00000478386 781 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 RPS3AP22-201ENST00000488297 769 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 MTCYBP35-201ENST00000503630 1137 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC026427.2-201ENST00000506228 536 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 RNU6-64P-201ENST00000517119 105 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AL356432.3-201ENST00000568952 465 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 SNORA62.6-201ENST00000606322 83 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 RNU1-30P-201ENST00000606575 163 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC004852.3-201ENST00000614131 326 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 MIR7844-201ENST00000616161 122 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC091304.6-201ENST00000619761 202 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC093591.3-201ENST00000634516 308 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 MTND1P37-201ENST00000636562 264 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
SKA1Q96BD8 MFSD8-236ENST00000641509 4050 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 AL079305.1-201ENST00000623159 3008 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SKA1Q96BD8 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AP002088.1-201ENST00000382740 395 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 RNU6-809P-201ENST00000384461 107 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 ZNF863P-201ENST00000426746 417 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL365184.2-201ENST00000431139 435 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC129850.1-201ENST00000436203 508 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL512286.1-201ENST00000439244 400 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC020550.1-201ENST00000447385 163 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 RPL30P6-201ENST00000475925 342 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL160314.1-201ENST00000490836 438 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 DSTNP2-201ENST00000504533 515 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 SNORA31.21-201ENST00000517180 77 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 RANP9-201ENST00000519957 271 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC091489.2-201ENST00000566263 604 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 MIR5195-201ENST00000583555 115 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 KC877982.1-201ENST00000602313 470 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AL353778.1-201ENST00000603149 408 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 AC245517.5-201ENST00000611529 162 ntBASIC3.67□□□□□ -1.82
SKA1Q96BD8 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA1Q96BD8 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
SKA1Q96BD8 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AP000568.1-201ENST00000282964 442 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 RNU5F-7P-201ENST00000363696 115 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 RNU6-270P-201ENST00000364131 105 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 TRIAP1P1-201ENST00000427062 225 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC006989.1-201ENST00000427212 131 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC244035.1-201ENST00000430042 390 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AL159987.2-201ENST00000432754 307 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 TIMM9P1-201ENST00000436122 256 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 ARPC3P1-201ENST00000437218 533 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 GDI2P2-201ENST00000445131 608 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC013267.1-201ENST00000458227 267 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC112204.1-201ENST00000502591 103 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 MRPS33P3-201ENST00000513456 322 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 RNU6-927P-201ENST00000516199 100 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 RNU6-201P-201ENST00000517100 61 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC005951.1-201ENST00000576706 485 ntBASIC3.66□□□□□ -1.82
SKA1Q96BD8 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.66□□□□□ -1.82
SKA1Q96BD8 AC008277.2-201ENST00000605196 797 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms