Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 RPS20P5-201ENST00000434808 360 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 USP9YP35-201ENST00000435696 412 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 MTCO3P11-201ENST00000455103 774 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 SETP11-201ENST00000473027 690 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC006445.1-201ENST00000491925 405 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC147055.4-201ENST00000504399 745 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC110760.3-202ENST00000515177 371 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 SCARNA13-201ENST00000516672 275 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 SNORA31.15-201ENST00000516771 132 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AL355836.1-201ENST00000555951 870 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 DUXAP1-201ENST00000556632 463 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC105224.1-201ENST00000587055 421 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AP001429.1-201ENST00000602568 530 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC013444.2-201ENST00000603317 787 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 HSPE1P7-201ENST00000604681 321 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC008277.2-201ENST00000605196 797 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AC026422.1-201ENST00000623961 452 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 DDX43P2-201ENST00000604753 1354 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 RNU6-744P-201ENST00000365557 107 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 RNU6-1316P-201ENST00000384242 108 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 SNORA36C-201ENST00000384289 132 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 RNU6-1207P-201ENST00000384343 107 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 ATP5F1P3-201ENST00000397213 657 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AL008987.1-201ENST00000415528 237 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 PPP1R11P2-201ENST00000423543 382 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 THAP5P1-201ENST00000439089 262 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC009961.3-201ENST00000449832 765 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 NIPA2P5-201ENST00000452282 464 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 SNORA84-201ENST00000459229 133 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 RPL31P60-201ENST00000478450 367 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC009712.1-201ENST00000564938 316 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC005951.2-201ENST00000576282 495 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 MIR5194-201ENST00000582634 120 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 BBIP1P1-201ENST00000602999 279 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 YPEL5P2-201ENST00000605553 359 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC024560.3-201ENST00000608482 349 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AL355493.4-201ENST00000618530 292 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC012314.7-201ENST00000619693 93 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 AC244100.1-202ENST00000621554 382 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.46□□□□□ -2.02
CCDC54Q8NEL0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 RNU6-76P-201ENST00000384060 104 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 TMEM167AP1-201ENST00000423409 219 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC022018.1-201ENST00000430685 241 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 RPL36AP6-201ENST00000435770 321 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 USP9YP10-201ENST00000454868 628 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 RN7SL504P-201ENST00000494496 287 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms