Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 LSM1P1-201ENST00000438629 273 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AL671855.1-201ENST00000446875 1203 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AP000542.1-201ENST00000448473 371 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 SNORD121B-201ENST00000458838 81 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 snoU13.22-201ENST00000459428 104 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 VN1R104P-201ENST00000505115 1009 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC109464.2-201ENST00000510242 943 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 SNORA70.16-201ENST00000516390 95 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 RN7SKP272-201ENST00000516988 232 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC009812.2-201ENST00000517657 457 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 PSMA2P1-201ENST00000526365 646 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC022690.1-201ENST00000526681 550 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC125611.2-201ENST00000551907 647 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AL355816.2-201ENST00000610049 647 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC004696.1-201ENST00000614345 607 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC007318.2-201ENST00000620999 243 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SKA3Q8IX90 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 AC092447.10-201ENST00000620607 1652 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC073325.2-201ENST00000339545 159 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AL672167.1-206ENST00000356293 943 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 RNU6-1078P-201ENST00000364522 103 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 SNORA71.1-201ENST00000364523 117 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 Y_RNA.333-201ENST00000365274 102 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 RNU6-1200P-201ENST00000384162 107 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 RNU6-114P-201ENST00000384704 105 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SKA3Q8IX90 RN7SKP266-201ENST00000410232 287 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 RNU6-1077P-201ENST00000410506 102 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC010099.3-201ENST00000423896 409 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 USP9YP36-201ENST00000424581 829 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AL035407.1-201ENST00000429211 571 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 RPL23AP20-201ENST00000447965 421 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 OR6C5P-201ENST00000452388 923 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC104472.2-201ENST00000469035 601 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AP004217.1-201ENST00000480579 346 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SKA3Q8IX90 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 SNORA3.4-201ENST00000515969 96 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 FAM60DP-201ENST00000524174 632 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AP001804.3-201ENST00000525146 880 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AP005205.1-201ENST00000563503 508 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC009159.2-201ENST00000617603 606 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 MIR6130-201ENST00000619419 109 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AP000676.4-201ENST00000624659 623 ntBASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.64□□□□□ -1.99
SKA3Q8IX90 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SKA3Q8IX90 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.63□□□□□ -1.99
SKA3Q8IX90 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
SKA3Q8IX90 AL391994.1-201ENST00000254724 282 ntBASIC2.63□□□□□ -1.99
SKA3Q8IX90 AP000568.1-201ENST00000282964 442 ntBASIC2.63□□□□□ -1.99
SKA3Q8IX90 MIR422A-201ENST00000362286 90 ntBASIC2.63□□□□□ -1.99
SKA3Q8IX90 Y_RNA.18-201ENST00000362461 102 ntBASIC2.63□□□□□ -1.99
SKA3Q8IX90 VTRNA1-1-201ENST00000363120 99 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 224 ms