Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC008549.1-201ENST00000512900 643 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 MIR4713-201ENST00000582691 75 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 OR2AS2P-201ENST00000606902 342 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 MIR6075-201ENST00000620782 95 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AC073308.1-201ENST00000623696 305 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AC068620.4-201ENST00000636730 1182 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 MIR219B-201ENST00000637023 88 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 RNU6-338P-201ENST00000383888 105 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 MIR183-201ENST00000384958 110 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 RNU6-1197P-201ENST00000391183 107 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 HMGN2P39-201ENST00000398005 273 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 RPS7P9-201ENST00000414704 586 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 MRPL35P3-201ENST00000421557 364 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 TOMM22P2-201ENST00000430735 237 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 HMGN2P3-201ENST00000433603 273 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC090774.1-201ENST00000435925 246 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 HMGN2P5-201ENST00000436882 273 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC008379.1-201ENST00000463655 464 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC069528.1-202ENST00000482888 637 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 RNU5F-8P-201ENST00000515941 111 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AP002812.4-201ENST00000532139 286 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 MTCYBP28-201ENST00000566728 1132 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 MIR4504-201ENST00000577413 92 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 MIR3126-201ENST00000577443 74 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 MIR3199-1-201ENST00000582434 88 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 ZNF92P3-201ENST00000596594 954 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 ABBA01000935.2-201ENST00000637477 838 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 HSPA8P4-201ENST00000511877 1920 ntBASIC0.87□□□□□ -2.27
LINC00643Q86TS7 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
LINC00643Q86TS7 AP000776.1-201ENST00000530032 1663 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC016716.1-201ENST00000265882 708 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 RNU6-989P-201ENST00000362756 107 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 U3.13-201ENST00000364804 214 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 RNU1-73P-201ENST00000383971 164 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 RNU6-339P-201ENST00000384310 107 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 SNORA44-201ENST00000384584 132 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 ATF1P1-201ENST00000406040 927 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AL024507.1-201ENST00000412741 274 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 OFD1P11Y-201ENST00000418213 1177 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 GTF2IP7-202ENST00000436677 309 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC092393.1-201ENST00000439625 742 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 HIGD1AP2-201ENST00000446367 280 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 PTENP1-201ENST00000447117 1215 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 USP9YP10-201ENST00000454868 628 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC008526.1-201ENST00000509149 338 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC109471.1-201ENST00000511631 612 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 RNA5SP445-201ENST00000515889 115 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 RNU6-362P-201ENST00000516736 90 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 HMGB1P1-201ENST00000522557 636 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AP004247.1-201ENST00000531556 1289 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC068276.1-201ENST00000605793 379 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 BX248123.2-201ENST00000606318 124 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AL050343.2-201ENST00000607338 280 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 AC090132.2-201ENST00000615881 347 ntBASIC0.86□□□□□ -2.27
LINC00643Q86TS7 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.86□□□□□ -2.27
LINC00643Q86TS7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SNORA22-201ENST00000383907 134 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SNORA36C-201ENST00000384289 132 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SNORA22C-201ENST00000384614 134 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SNRPEP2-201ENST00000397592 279 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AL023284.1-201ENST00000403956 276 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 PRRC2CP1-201ENST00000404428 159 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 MIR1285-1-201ENST00000408593 84 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 RNU6-712P-201ENST00000410558 100 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms