Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AL583843.1-201ENST00000456070 346 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 HSPE1P22-201ENST00000456856 327 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC116447.1-201ENST00000613153 453 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC025263.3-201ENST00000622965 1396 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 PRELID3BP11-201ENST00000414230 479 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC114973.1-201ENST00000429057 632 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC008427.1-201ENST00000503102 655 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 VN1R84P-201ENST00000593697 235 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 HSPE1P11-201ENST00000339579 310 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 HMGN1P14-201ENST00000412459 517 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AL365400.1-201ENST00000431854 640 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 RPS26P21-201ENST00000475397 348 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 RBM43P1-201ENST00000476891 1081 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC108078.1-201ENST00000508073 725 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 MIR4474-201ENST00000579189 78 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 MIR5694-201ENST00000581190 76 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AC096720.1-201ENST00000604441 183 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 BNIP3P4-201ENST00000604946 565 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 AL355596.1-201ENST00000565399 3996 ntBASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.17□□□□□ -2.22
CSPG4Q6UVK1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 Y_RNA.115-201ENST00000363272 98 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 RNU6-461P-201ENST00000364195 107 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 HMGN2P38-201ENST00000423806 265 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 CASP3P1-201ENST00000446037 609 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 HMGN2P18-201ENST00000450680 270 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 RNA5SP121-201ENST00000516537 101 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AL049838.1-201ENST00000563647 981 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 MIR4512-201ENST00000583257 77 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC090970.3-201ENST00000612566 866 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 RNU1-109P-201ENST00000383960 147 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 MIR222-201ENST00000384992 110 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 MIR1304-201ENST00000408243 91 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC093084.1-201ENST00000424233 687 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC098934.3-201ENST00000430450 190 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 HMGB1P45-201ENST00000435986 653 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC036111.3-201ENST00000526389 112 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC068714.1-201ENST00000559623 800 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 ACTR3BP3-201ENST00000565577 979 ntBASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.16□□□□□ -2.22
CSPG4Q6UVK1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
CSPG4Q6UVK1 CR382285.2-201ENST00000624662 1495 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 USP9YP33-201ENST00000412220 421 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 USP9YP35-201ENST00000435696 412 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AL109741.2-201ENST00000455561 343 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 MTCO2P9-201ENST00000503214 694 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 MTCYBP37-201ENST00000510642 1133 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AP003033.1-201ENST00000527244 415 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AC092451.2-201ENST00000538746 658 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AC006338.1-201ENST00000618453 749 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AL627230.5-201ENST00000619807 58 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 U3.40-201ENST00000408706 208 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 TRAPPC2P5-201ENST00000426293 308 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AL078601.1-201ENST00000444542 271 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 RN7SKP34-201ENST00000516142 244 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 AL109653.1-201ENST00000603091 248 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms