Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC009901.1-201ENST00000506703 541 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC091826.1-201ENST00000514065 313 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 SNORA70.24-201ENST00000517233 118 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 MIR5195-201ENST00000583555 115 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC106052.1-201ENST00000608029 497 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC005046.1-201ENST00000608515 625 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AL442067.2-201ENST00000614033 363 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AL161629.2-201ENST00000615347 275 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AL603758.1-201ENST00000618654 241 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 OR4G2P-202ENST00000641004 1759 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 MAPK10-266ENST00000641066 6555 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RNU6-777P-201ENST00000364265 104 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RNU6-1078P-201ENST00000364522 103 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AL512633.1-201ENST00000399931 655 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AL356421.1-201ENST00000403255 413 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 SNORA11.1-201ENST00000408133 129 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RPL19P1-201ENST00000411635 428 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RAP1BP1-201ENST00000412709 553 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 EEF1A1P41-201ENST00000414667 207 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RPL36AP6-201ENST00000435770 321 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 MTCO2P20-201ENST00000437339 673 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC004854.1-201ENST00000440356 349 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 UBBP3-201ENST00000445497 241 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 USP9YP10-201ENST00000454868 628 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC092798.1-201ENST00000458542 409 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RPS29P26-201ENST00000477483 171 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC021382.1-201ENST00000483523 359 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC010587.2-201ENST00000511727 448 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC024589.1-201ENST00000512207 263 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 TTC39CP1-201ENST00000512513 755 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 SCARNA13-201ENST00000516672 275 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC087373.1-201ENST00000524920 491 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AP000857.1-201ENST00000532151 543 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 HSPE1P20-201ENST00000538133 289 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 ELOCP31-201ENST00000540463 467 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC022080.3-201ENST00000544433 482 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AL132857.1-201ENST00000555180 708 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC022662.1-201ENST00000580252 331 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 MIR3605-201ENST00000583214 100 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC008739.2-201ENST00000597006 317 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RPL23AP78-201ENST00000599928 470 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC024153.1-201ENST00000603103 365 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AP000526.1-201ENST00000603308 1388 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 RPP40P2-201ENST00000603596 712 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AP000787.2-201ENST00000604432 568 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC080013.3-201ENST00000606839 578 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 AC073346.2-201ENST00000624724 2058 ntBASIC3.06□□□□□ -1.92
CCDC40Q4G0X9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AP000776.1-201ENST00000530032 1663 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 MIR26A1-201ENST00000362205 77 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 RNU1-140P-201ENST00000365040 165 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 RNU6-636P-201ENST00000384598 107 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 RNU6-906P-201ENST00000384700 70 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AL356867.1-201ENST00000429623 299 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 SNRPEP7-201ENST00000438350 220 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 RPS3AP12-201ENST00000443616 753 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC112653.1-201ENST00000443851 386 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 PTENP1-201ENST00000447117 1215 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AL133271.1-201ENST00000538229 291 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 ACTR3BP3-201ENST00000565577 979 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AL161756.2-201ENST00000604597 246 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC002064.3-201ENST00000623448 346 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 AC110079.1-202ENST00000635213 138 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 SDAD1P2-201ENST00000441308 2028 ntBASIC3.05□□□□□ -1.92
CCDC40Q4G0X9 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 Z82195.2-201ENST00000612348 18351 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms