Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 USP9YP6-201ENST00000413550 854 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 OFD1P18Y-201ENST00000420889 959 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 DNAJC19P4-201ENST00000440115 345 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 USP9YP34-201ENST00000453983 808 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 RAC1P5-201ENST00000512182 576 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC004923.2-201ENST00000529649 369 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC025016.1-201ENST00000616746 682 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-600P-201ENST00000362524 99 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-452P-201ENST00000384406 107 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AL035405.1-201ENST00000400795 710 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 MTATP6P31-201ENST00000406985 692 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 MIR1303-201ENST00000408625 86 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 HMGB3P2-201ENST00000411913 584 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 SUMO1P4-201ENST00000429430 302 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AL645568.3-201ENST00000433683 316 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC068135.1-201ENST00000446164 246 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC080013.2-201ENST00000460866 323 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC090255.1-201ENST00000495779 349 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC009901.1-201ENST00000506703 541 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 MTCO3P42-201ENST00000509488 518 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 MTCO3P39-201ENST00000514812 518 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 HAUS1P3-201ENST00000523909 662 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 C1DP5-201ENST00000525775 383 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AL354943.1-201ENST00000572103 781 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 MIR4419B-201ENST00000577260 68 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 uc_338.5-201ENST00000611839 155 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 RMST_6.1-201ENST00000611980 203 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LINC00216-201ENST00000623548 1126 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 SNORA7.1-201ENST00000363750 139 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 RPL21P66-201ENST00000426566 466 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 SNRPEP4-201ENST00000435815 279 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 CIR1P1-201ENST00000524055 1133 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 COX6CP5-201ENST00000527162 228 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC087441.2-201ENST00000529141 262 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC104581.2-201ENST00000572227 430 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 VN1R74P-201ENST00000613259 503 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 MIR6895-201ENST00000613497 78 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.14□□□□□ -2.07
CCDC88AQ3V6T2 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 RNA5SP139-201ENST00000364340 117 ntBASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-1181P-201ENST00000384191 106 ntBASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 RN7SKP101-201ENST00000411376 320 ntBASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 AC110792.2-201ENST00000510278 224 ntBASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 AC013444.2-201ENST00000603317 787 ntBASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CCDC88AQ3V6T2 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 PABPC1P9-201ENST00000426076 1612 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AC073055.1-201ENST00000456901 1621 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AL391987.6-201ENST00000305671 199 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-392P-201ENST00000364926 101 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 HMGB3P31-201ENST00000413333 595 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AC096632.1-201ENST00000427395 310 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AL513321.1-201ENST00000441175 761 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AC097499.1-201ENST00000444277 208 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 TPTE2P6-202ENST00000445572 1007 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 RPL37P25-201ENST00000507308 276 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 SNORA31.8-201ENST00000516327 108 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms