Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 U3.15-201ENST00000365398 212 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 RNU6-882P-201ENST00000391025 103 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC068050.1-201ENST00000394891 380 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 RNU4-6P-201ENST00000410804 122 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 PPP1R11P2-201ENST00000423543 382 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AL359073.1-201ENST00000448036 403 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 HMGB3P22-202ENST00000451823 572 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 RNU7-63P-201ENST00000459054 62 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 RN7SL271P-201ENST00000487601 295 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 RPL31P61-201ENST00000496160 376 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 MTCYBP18-201ENST00000501056 747 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 SNORA20.3-201ENST00000516880 132 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AF235103.2-201ENST00000525753 346 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC135001.1-201ENST00000544546 283 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC034105.3-201ENST00000565294 442 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC022968.1-201ENST00000567372 442 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AL357078.3-201ENST00000607528 618 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 DISC2.1-201ENST00000612827 205 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AL353748.2-201ENST00000622148 471 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 EXOC5P1-201ENST00000510543 1969 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC004925.1-201ENST00000624256 2706 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 SNORA72.1-201ENST00000363485 129 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 MT-TL1-201ENST00000386347 75 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 RPL32P23-201ENST00000397237 405 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 RNU2-36P-201ENST00000410361 191 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 RPL7AP73-201ENST00000413490 353 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 FTH1P6-201ENST00000430768 320 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 USP12PX-201ENST00000432383 1057 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 MTATP6P16-201ENST00000434543 526 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 RPS29P7-201ENST00000439662 171 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 GMFBP1-201ENST00000467831 427 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 RPL23AP2-201ENST00000471227 466 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AP000926.1-201ENST00000479573 241 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AL163973.1-201ENST00000484753 577 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 VN1R105P-201ENST00000486595 910 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC116562.3-201ENST00000506136 177 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC117522.1-201ENST00000509821 380 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC090281.1-201ENST00000523019 276 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC068587.5-201ENST00000528506 175 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 CBX3P5-201ENST00000552017 521 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 GNRHR2P1-201ENST00000555315 631 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 MIR4286-201ENST00000580651 93 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC006116.10-201ENST00000591836 581 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AL049634.3-201ENST00000604968 457 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC012443.1-201ENST00000605605 231 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AC130324.3-201ENST00000614165 542 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AP001486.3-201ENST00000615334 372 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 uc_338.11-201ENST00000619132 160 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 MIR3662-201ENST00000637030 95 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 TAB3P1-202ENST00000452645 1634 ntBASIC3.91□□□□□ -1.78
PTCHD3Q3KNS1 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms