Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC0.98□□□□□ -2.25
COL7A1Q02388 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC0.98□□□□□ -2.25
COL7A1Q02388 AL049838.1-201ENST00000563647 981 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC0.98□□□□□ -2.25
COL7A1Q02388 C2orf27A-204ENST00000623058 969 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
COL7A1Q02388 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.97□□□□□ -2.25
COL7A1Q02388 RNU6-492P-201ENST00000363035 104 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 MIR222-201ENST00000384992 110 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 SNRPEP2-201ENST00000397592 279 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 USP9YP33-201ENST00000412220 421 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 USP9YP35-201ENST00000435696 412 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 RPS15AP7-201ENST00000439294 405 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 BMI1P1-201ENST00000445879 941 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC0.97□□□□□ -2.25
COL7A1Q02388 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC068446.3-201ENST00000555285 382 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 AL592494.3-201ENST00000609485 464 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 AC068700.1-201ENST00000565862 3754 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC0.97□□□□□ -2.25
COL7A1Q02388 OR5AQ1P-202ENST00000641257 1534 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 RNU6-35P-201ENST00000384530 107 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.97□□□□□ -2.25
COL7A1Q02388 CKS1BP5-201ENST00000434172 273 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AL445687.1-201ENST00000439946 251 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC012181.1-201ENST00000479895 423 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.97□□□□□ -2.25
COL7A1Q02388 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.97□□□□□ -2.25
COL7A1Q02388 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC025755.1-201ENST00000521306 278 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.97□□□□□ -2.25
COL7A1Q02388 AC121758.2-201ENST00000553271 193 ntBASIC0.97□□□□□ -2.25
COL7A1Q02388 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.97□□□□□ -2.25
COL7A1Q02388 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC0.97□□□□□ -2.25
COL7A1Q02388 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
COL7A1Q02388 AL596028.1-201ENST00000326971 197 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 RNU6-178P-201ENST00000384631 104 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 RPL26P37-201ENST00000411983 438 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 RPL17P12-201ENST00000413391 526 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 AC007560.1-201ENST00000426912 237 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 AL109741.2-201ENST00000455561 343 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 AC110792.2-201ENST00000510278 224 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 RNA5SP82-201ENST00000516707 92 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 AC104115.2-201ENST00000523026 687 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC0.96□□□□□ -2.26
COL7A1Q02388 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC0.96□□□□□ -2.26
COL7A1Q02388 AL133393.1-201ENST00000603277 287 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC0.96□□□□□ -2.26
COL7A1Q02388 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
COL7A1Q02388 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
COL7A1Q02388 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
COL7A1Q02388 RN7SKP200-201ENST00000410564 320 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC0.96□□□□□ -2.26
COL7A1Q02388 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.96□□□□□ -2.26
COL7A1Q02388 AL031659.1-201ENST00000447075 539 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 RPL23AP35-201ENST00000451906 501 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
COL7A1Q02388 AC105313.1-201ENST00000509121 353 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 AC105245.1-201ENST00000581934 244 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 DUXAP3-201ENST00000603616 594 ntBASIC0.96□□□□□ -2.26
COL7A1Q02388 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.96□□□□□ -2.26
COL7A1Q02388 Y_RNA.48-201ENST00000362710 103 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 RNA5SP331-201ENST00000364986 107 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC114973.1-201ENST00000429057 632 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.95□□□□□ -2.26
COL7A1Q02388 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC0.95□□□□□ -2.26
COL7A1Q02388 RPL21P39-201ENST00000463605 483 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 RPL21P93-201ENST00000480465 489 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC233702.1-201ENST00000482905 502 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC093591.1-201ENST00000491435 481 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC0.95□□□□□ -2.26
COL7A1Q02388 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
COL7A1Q02388 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
COL7A1Q02388 MIR1304-201ENST00000408243 91 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 RNA5SP127-201ENST00000411051 133 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AC109780.2-201ENST00000413467 845 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC0.95□□□□□ -2.26
COL7A1Q02388 RNU6-56P-201ENST00000516986 93 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AP003033.1-201ENST00000527244 415 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 Xist_exon1.1-201ENST00000618930 85 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AC025263.3-201ENST00000622965 1396 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.95□□□□□ -2.26
COL7A1Q02388 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC0.95□□□□□ -2.26
COL7A1Q02388 ZNF734P-201ENST00000419494 1534 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC0.95□□□□□ -2.26
COL7A1Q02388 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC0.95□□□□□ -2.26
COL7A1Q02388 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC0.95□□□□□ -2.26
COL7A1Q02388 SEM1P1-201ENST00000506694 209 ntBASIC0.95□□□□□ -2.26
COL7A1Q02388 AC006499.2-201ENST00000513470 337 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms