Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP004371.1-201ENST00000525240 214 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 ZNF519P2-201ENST00000557032 169 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA1P49639 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA1P49639 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA1P49639 MIR5096-201ENST00000583713 70 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 IPO5P1-202ENST00000600039 287 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AL606834.2-201ENST00000602954 668 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC025449.1-201ENST00000603896 529 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 BRDTP1-201ENST00000605735 677 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC004696.1-201ENST00000614345 607 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC243312.2-201ENST00000623340 601 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 MIR3688-2-201ENST00000636963 87 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
HOXA1P49639 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA1P49639 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA1P49639 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA1P49639 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA1P49639 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HOXA1P49639 RNU1-75P-201ENST00000347264 129 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXA1P49639 RNU6-1074P-201ENST00000383995 104 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 Y_RNA.450-201ENST00000384198 113 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 SNORD3H-201ENST00000384486 214 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 CYB5AP4-201ENST00000396692 399 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA1P49639 AL807761.1-201ENST00000417622 171 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 HMGB3P20-201ENST00000417997 600 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA1P49639 AC016712.1-201ENST00000431088 378 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA1P49639 AL353705.1-201ENST00000433468 480 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 MTND3P21-201ENST00000433774 331 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA1P49639 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA1P49639 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA1P49639 AL136380.1-201ENST00000447970 162 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 SNRPGP6-201ENST00000451124 220 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC108059.3-201ENST00000456388 214 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AL049714.1-201ENST00000466686 347 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 RN7SL303P-201ENST00000469773 251 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 RN7SL860P-201ENST00000473738 223 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC108860.1-201ENST00000484521 383 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC006483.1-201ENST00000487308 313 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC023194.1-201ENST00000493084 308 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA1P49639 AC005921.1-201ENST00000510589 286 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA1P49639 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA1P49639 AC026801.2-201ENST00000515352 425 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC068657.1-201ENST00000520807 306 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA1P49639 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA1P49639 BNIP3P5-201ENST00000562290 498 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 MIR4293-201ENST00000584305 78 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA1P49639 GLUD1P4-201ENST00000590914 418 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA1P49639 SNRPGP15-201ENST00000600149 222 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AP000907.4-201ENST00000604143 237 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AL022099.1-201ENST00000604551 712 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 AL121992.2-201ENST00000606262 256 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 WT1-AS_8.1-201ENST00000615200 275 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA1P49639 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.18□□□□□ -1.9
HOXA1P49639 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA1P49639 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA1P49639 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA1P49639 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA1P49639 Y_RNA.22-201ENST00000362492 102 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 SNORD56.2-201ENST00000363242 71 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 RNA5SP509-201ENST00000364577 119 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 RNU6-483P-201ENST00000384088 108 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXA1P49639 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXA1P49639 RNU6-278P-201ENST00000390945 109 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA1P49639 RNU2-43P-201ENST00000410306 190 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 RNU6-55P-201ENST00000411092 107 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 RNU6-954P-201ENST00000411355 107 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 SDCBPP3-201ENST00000419629 891 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXA1P49639 MTND1P2-201ENST00000430604 821 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 RPL23AP22-201ENST00000437556 453 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC004866.2-201ENST00000438285 481 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC005094.1-201ENST00000440420 368 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AL662791.1-201ENST00000441992 928 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 RANP8-201ENST00000444720 713 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA1P49639 NFU1P2-201ENST00000448700 469 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC010285.1-201ENST00000470580 392 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC069439.1-201ENST00000494739 167 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms