Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TAB3P1-202ENST00000452645 1634 ntBASIC3.7□□□□□ -1.82
PTPN9P43378 AC138915.3-201ENST00000562908 1389 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN9P43378 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN9P43378 RNU6-1074P-201ENST00000383995 104 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 RNU6-1215P-201ENST00000384441 102 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN9P43378 AL109755.1-201ENST00000401791 649 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 RNU6-648P-201ENST00000410190 107 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AF274854.1-201ENST00000413236 615 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC019097.1-201ENST00000424783 735 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.69□□□□□ -1.82
PTPN9P43378 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN9P43378 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN9P43378 MTND1P1-201ENST00000445453 368 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 TMED11P-201ENST00000479478 690 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN9P43378 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.69□□□□□ -1.82
PTPN9P43378 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN9P43378 AC010587.1-201ENST00000505809 469 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 Vault.3-201ENST00000516676 95 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 SNORA70.18-201ENST00000516696 98 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC109635.4-202ENST00000531666 412 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AL133271.1-201ENST00000538229 291 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN9P43378 AC006116.10-201ENST00000591836 581 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.69□□□□□ -1.82
PTPN9P43378 DEFB131E-202ENST00000602581 683 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AL021997.1-201ENST00000605757 193 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC098614.4-201ENST00000607601 462 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC008121.2-201ENST00000614647 523 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC022149.2-201ENST00000621061 203 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN9P43378 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN9P43378 AC012442.3-202ENST00000636742 206 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 AC099654.12-201ENST00000639868 649 ntBASIC3.69□□□□□ -1.82
PTPN9P43378 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTPN9P43378 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.69□□□□□ -1.82
PTPN9P43378 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.69□□□□□ -1.82
PTPN9P43378 DDX10P1-201ENST00000448545 1933 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 Y_RNA.6-201ENST00000362350 114 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 RNU5E-1-201ENST00000362477 120 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 Y_RNA.41-201ENST00000362646 102 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 SNORA51.2-201ENST00000364595 132 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 MIR607-201ENST00000385241 96 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 MIR134-201ENST00000385258 73 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 DBIP2-201ENST00000419076 262 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 DUTP6-201ENST00000425573 462 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC122718.1-201ENST00000439448 744 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 FAM133DP-201ENST00000464802 691 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC078785.3-201ENST00000476607 425 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 RBM43P1-201ENST00000476891 1081 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC106707.2-201ENST00000484182 374 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC135721.1-201ENST00000497954 479 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC026784.1-201ENST00000507986 352 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC104619.4-201ENST00000510773 249 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 RNU1-45P-201ENST00000517191 141 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC023632.4-201ENST00000517783 191 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 TRMT10BP1-201ENST00000519377 943 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 DEFB108D-201ENST00000527787 222 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.68□□□□□ -1.82
PTPN9P43378 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.68□□□□□ -1.82
PTPN9P43378 AP003465.2-201ENST00000602571 373 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC004492.1-201ENST00000607036 742 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.68□□□□□ -1.82
PTPN9P43378 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.68□□□□□ -1.82
PTPN9P43378 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PTPN9P43378 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC068792.1-201ENST00000621354 417 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AL360181.4-201ENST00000621752 134 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.68□□□□□ -1.82
PTPN9P43378 CR392039.5-201ENST00000623201 510 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC112200.1-201ENST00000625015 234 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 AC019226.1-201ENST00000625666 515 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 AC009093.8-201ENST00000641769 292 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
PTPN9P43378 AP001350.1-201ENST00000601906 1524 ntBASIC3.68□□□□□ -1.82
PTPN9P43378 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTPN9P43378 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms