Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 AC012321.1-201ENST00000561622 1588 ntBASIC2.77□□□□□ -1.97
SDC1P18827 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC1P18827 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
SDC1P18827 AC093010.3-201ENST00000570269 15214 ntBASIC2.76□□□□□ -1.97
SDC1P18827 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.76□□□□□ -1.97
SDC1P18827 RPL9P7-201ENST00000330965 580 ntBASIC2.76□□□□□ -1.97
SDC1P18827 DEFB108F-201ENST00000344638 222 ntBASIC2.76□□□□□ -1.97
SDC1P18827 Y_RNA.18-201ENST00000362461 102 ntBASIC2.76□□□□□ -1.97
SDC1P18827 RNU6-660P-201ENST00000364566 109 ntBASIC2.76□□□□□ -1.97
SDC1P18827 RNU6-769P-201ENST00000384407 104 ntBASIC2.76□□□□□ -1.97
SDC1P18827 U3.20-201ENST00000390909 217 ntBASIC2.76□□□□□ -1.97
SDC1P18827 RPL5P18-201ENST00000406671 891 ntBASIC2.76□□□□□ -1.97
SDC1P18827 MIR1305-201ENST00000408300 86 ntBASIC2.76□□□□□ -1.97
SDC1P18827 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC1P18827 AC005005.2-201ENST00000420779 380 ntBASIC2.76□□□□□ -1.97
SDC1P18827 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.76□□□□□ -1.97
SDC1P18827 RPL7P46-201ENST00000425129 740 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AL593851.1-201ENST00000426171 157 ntBASIC2.76□□□□□ -1.97
SDC1P18827 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.76□□□□□ -1.97
SDC1P18827 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.76□□□□□ -1.97
SDC1P18827 AL592447.1-201ENST00000447592 540 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC093392.2-201ENST00000450682 337 ntBASIC2.76□□□□□ -1.97
SDC1P18827 RNA5SP310-201ENST00000459084 116 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC034236.1-201ENST00000469891 373 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC106872.3-201ENST00000495104 446 ntBASIC2.76□□□□□ -1.97
SDC1P18827 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC1P18827 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.76□□□□□ -1.97
SDC1P18827 SNORA31.26-201ENST00000517250 137 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC009812.2-201ENST00000517657 457 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC1P18827 ERHP1-201ENST00000523006 310 ntBASIC2.76□□□□□ -1.97
SDC1P18827 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AP001804.3-201ENST00000525146 880 ntBASIC2.76□□□□□ -1.97
SDC1P18827 DEFB108D-201ENST00000527787 222 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC1P18827 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.76□□□□□ -1.97
SDC1P18827 AC002400.1-201ENST00000569310 726 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC008751.2-201ENST00000597885 980 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC106791.2-201ENST00000604680 391 ntBASIC2.76□□□□□ -1.97
SDC1P18827 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SDC1P18827 Z99289.3-201ENST00000605586 594 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC103710.4-201ENST00000609301 899 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC009570.1-201ENST00000609599 745 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AP000254.1-201ENST00000609934 520 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC090115.4-201ENST00000609970 188 ntBASIC2.76□□□□□ -1.97
SDC1P18827 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AL603758.1-201ENST00000618654 241 ntBASIC2.76□□□□□ -1.97
SDC1P18827 MIR6075-201ENST00000620782 95 ntBASIC2.76□□□□□ -1.97
SDC1P18827 PCMTD1P7-201ENST00000634506 357 ntBASIC2.76□□□□□ -1.97
SDC1P18827 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
SDC1P18827 AC007671.2-201ENST00000637344 619 ntBASIC2.76□□□□□ -1.97
SDC1P18827 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SDC1P18827 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SDC1P18827 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
SDC1P18827 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SDC1P18827 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SDC1P18827 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.75□□□□□ -1.97
SDC1P18827 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SDC1P18827 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SDC1P18827 RNA5SP374-201ENST00000362939 125 ntBASIC2.75□□□□□ -1.97
SDC1P18827 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SDC1P18827 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
SDC1P18827 RNU6-637P-201ENST00000384050 107 ntBASIC2.75□□□□□ -1.97
SDC1P18827 MIR512-1-201ENST00000384913 84 ntBASIC2.75□□□□□ -1.97
SDC1P18827 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.75□□□□□ -1.97
SDC1P18827 AC233728.2-201ENST00000425348 757 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC1P18827 MTND5P2-201ENST00000442927 1142 ntBASIC2.75□□□□□ -1.97
SDC1P18827 FAM103A2P-201ENST00000444122 354 ntBASIC2.75□□□□□ -1.97
SDC1P18827 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.75□□□□□ -1.97
SDC1P18827 OR6K1P-201ENST00000456766 971 ntBASIC2.75□□□□□ -1.97
SDC1P18827 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
SDC1P18827 RPL27AP5-201ENST00000469428 449 ntBASIC2.75□□□□□ -1.97
SDC1P18827 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.75□□□□□ -1.97
SDC1P18827 RPL31P60-201ENST00000478450 367 ntBASIC2.75□□□□□ -1.97
SDC1P18827 HSPE1P6-201ENST00000479457 291 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC1P18827 RN7SKP282-201ENST00000516824 299 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC1P18827 AP004247.1-201ENST00000531556 1289 ntBASIC2.75□□□□□ -1.97
SDC1P18827 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.75□□□□□ -1.97
SDC1P18827 AC068587.4-201ENST00000533893 186 ntBASIC2.75□□□□□ -1.97
SDC1P18827 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.75□□□□□ -1.97
SDC1P18827 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC1P18827 MIR3921-201ENST00000577308 85 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC060771.1-201ENST00000582031 164 ntBASIC2.75□□□□□ -1.97
SDC1P18827 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.75□□□□□ -1.97
SDC1P18827 AL139344.1-201ENST00000605228 195 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC008962.1-201ENST00000605729 304 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC068831.7-201ENST00000616954 363 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC079597.1-201ENST00000624306 508 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC099063.3-201ENST00000642066 185 ntBASIC2.75□□□□□ -1.97
SDC1P18827 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
SDC1P18827 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
SDC1P18827 AC009902.3-201ENST00000606235 2172 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AC090740.1-201ENST00000623193 2262 ntBASIC2.75□□□□□ -1.97
SDC1P18827 AP003122.5-201ENST00000527668 3766 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms