Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.39■■□□□ 1.01
Trim39Q9ESN2 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trim39Q9ESN2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim39Q9ESN2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim39Q9ESN2 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trim39Q9ESN2 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim39Q9ESN2 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim39Q9ESN2 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.37■■□□□ 1.01
Trim39Q9ESN2 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim39Q9ESN2 Gm30023-201ENSMUST00000197970 889 ntBASIC21.37■■□□□ 1.01
Trim39Q9ESN2 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.37■■□□□ 1.01
Trim39Q9ESN2 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim39Q9ESN2 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.36■■□□□ 1.01
Trim39Q9ESN2 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Trim39Q9ESN2 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Trim39Q9ESN2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Trim39Q9ESN2 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim39Q9ESN2 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim39Q9ESN2 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Trim39Q9ESN2 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim39Q9ESN2 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim39Q9ESN2 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim39Q9ESN2 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.33■■□□□ 1.01
Trim39Q9ESN2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
Trim39Q9ESN2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.33■■□□□ 1
Trim39Q9ESN2 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim39Q9ESN2 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.33■■□□□ 1
Trim39Q9ESN2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Trim39Q9ESN2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
Trim39Q9ESN2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim39Q9ESN2 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim39Q9ESN2 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Trim39Q9ESN2 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim39Q9ESN2 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Trim39Q9ESN2 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Trim39Q9ESN2 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Trim39Q9ESN2 Nkain2-201ENSMUST00000092602 558 ntBASIC21.31■■□□□ 1
Trim39Q9ESN2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Trim39Q9ESN2 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trim39Q9ESN2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim39Q9ESN2 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21.3■■□□□ 1
Trim39Q9ESN2 Gm9939-201ENSMUST00000067161 1154 ntBASIC21.3■■□□□ 1
Trim39Q9ESN2 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim39Q9ESN2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim39Q9ESN2 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Trim39Q9ESN2 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Trim39Q9ESN2 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim39Q9ESN2 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
Trim39Q9ESN2 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim39Q9ESN2 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim39Q9ESN2 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim39Q9ESN2 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim39Q9ESN2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim39Q9ESN2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim39Q9ESN2 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.27■■□□□ 1
Trim39Q9ESN2 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Trim39Q9ESN2 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim39Q9ESN2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim39Q9ESN2 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim39Q9ESN2 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim39Q9ESN2 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim39Q9ESN2 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim39Q9ESN2 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim39Q9ESN2 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim39Q9ESN2 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim39Q9ESN2 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim39Q9ESN2 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Trim39Q9ESN2 Gm6821-201ENSMUST00000107540 542 ntBASIC21.23■□□□□ 0.99
Trim39Q9ESN2 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim39Q9ESN2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim39Q9ESN2 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.21■□□□□ 0.99
Trim39Q9ESN2 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim39Q9ESN2 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim39Q9ESN2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
Trim39Q9ESN2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim39Q9ESN2 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim39Q9ESN2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim39Q9ESN2 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.19■□□□□ 0.98
Trim39Q9ESN2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim39Q9ESN2 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms