Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
Vps53Q8CCB4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
Vps53Q8CCB4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
Vps53Q8CCB4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.85■■□□□ 1.89
Vps53Q8CCB4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Vps53Q8CCB4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Vps53Q8CCB4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Vps53Q8CCB4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
Vps53Q8CCB4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.82■■□□□ 1.88
Vps53Q8CCB4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Vps53Q8CCB4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Vps53Q8CCB4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Vps53Q8CCB4 Cap2-205ENSMUST00000225824 1634 ntBASIC26.8■■□□□ 1.88
Vps53Q8CCB4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC26.8■■□□□ 1.88
Vps53Q8CCB4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Vps53Q8CCB4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Vps53Q8CCB4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26.8■■□□□ 1.88
Vps53Q8CCB4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Vps53Q8CCB4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
Vps53Q8CCB4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Vps53Q8CCB4 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC26.79■■□□□ 1.88
Vps53Q8CCB4 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Vps53Q8CCB4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Vps53Q8CCB4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
Vps53Q8CCB4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Vps53Q8CCB4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Vps53Q8CCB4 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
Vps53Q8CCB4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.76■■□□□ 1.87
Vps53Q8CCB4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Vps53Q8CCB4 Gm6311-201ENSMUST00000073790 878 ntBASIC26.76■■□□□ 1.87
Vps53Q8CCB4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Vps53Q8CCB4 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Vps53Q8CCB4 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Vps53Q8CCB4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC26.74■■□□□ 1.87
Vps53Q8CCB4 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.74■■□□□ 1.87
Vps53Q8CCB4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Vps53Q8CCB4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps53Q8CCB4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Vps53Q8CCB4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
Vps53Q8CCB4 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
Vps53Q8CCB4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Vps53Q8CCB4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC26.7■■□□□ 1.87
Vps53Q8CCB4 Gm30023-201ENSMUST00000197970 889 ntBASIC26.7■■□□□ 1.86
Vps53Q8CCB4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.7■■□□□ 1.86
Vps53Q8CCB4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
Vps53Q8CCB4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Vps53Q8CCB4 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Vps53Q8CCB4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC26.69■■□□□ 1.86
Vps53Q8CCB4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Vps53Q8CCB4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Vps53Q8CCB4 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Vps53Q8CCB4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
Vps53Q8CCB4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
Vps53Q8CCB4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Vps53Q8CCB4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
Vps53Q8CCB4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
Vps53Q8CCB4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Vps53Q8CCB4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC26.66■■□□□ 1.86
Vps53Q8CCB4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Vps53Q8CCB4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Vps53Q8CCB4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
Vps53Q8CCB4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Vps53Q8CCB4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
Vps53Q8CCB4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Vps53Q8CCB4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Vps53Q8CCB4 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Vps53Q8CCB4 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
Vps53Q8CCB4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Vps53Q8CCB4 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Vps53Q8CCB4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Vps53Q8CCB4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Vps53Q8CCB4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Vps53Q8CCB4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC26.62■■□□□ 1.85
Vps53Q8CCB4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC26.61■■□□□ 1.85
Vps53Q8CCB4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Vps53Q8CCB4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Vps53Q8CCB4 Particl-201ENSMUST00000205370 1560 ntBASIC26.61■■□□□ 1.85
Vps53Q8CCB4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
Vps53Q8CCB4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.59■■□□□ 1.85
Vps53Q8CCB4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Vps53Q8CCB4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Vps53Q8CCB4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Vps53Q8CCB4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC26.58■■□□□ 1.85
Vps53Q8CCB4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC26.58■■□□□ 1.85
Vps53Q8CCB4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Vps53Q8CCB4 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC26.58■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms