Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim47Q8C0E3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC25.95■■□□□ 1.74
Trim47Q8C0E3 Gm4799-201ENSMUST00000095396 657 ntBASIC25.95■■□□□ 1.74
Trim47Q8C0E3 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Trim47Q8C0E3 Gm14121-201ENSMUST00000121441 1380 ntBASIC25.94■■□□□ 1.74
Trim47Q8C0E3 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trim47Q8C0E3 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trim47Q8C0E3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Trim47Q8C0E3 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC25.93■■□□□ 1.74
Trim47Q8C0E3 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trim47Q8C0E3 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC25.93■■□□□ 1.74
Trim47Q8C0E3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
Trim47Q8C0E3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC25.92■■□□□ 1.74
Trim47Q8C0E3 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
Trim47Q8C0E3 Gm6311-201ENSMUST00000073790 878 ntBASIC25.92■■□□□ 1.74
Trim47Q8C0E3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Trim47Q8C0E3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim47Q8C0E3 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Trim47Q8C0E3 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim47Q8C0E3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trim47Q8C0E3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trim47Q8C0E3 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC25.9■■□□□ 1.74
Trim47Q8C0E3 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
Trim47Q8C0E3 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Trim47Q8C0E3 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Trim47Q8C0E3 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim47Q8C0E3 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim47Q8C0E3 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim47Q8C0E3 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim47Q8C0E3 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim47Q8C0E3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim47Q8C0E3 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC25.86■■□□□ 1.73
Trim47Q8C0E3 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Trim47Q8C0E3 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
Trim47Q8C0E3 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Trim47Q8C0E3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.84■■□□□ 1.73
Trim47Q8C0E3 Mir3960-201ENSMUST00000198213 73 ntBASIC25.83■■□□□ 1.73
Trim47Q8C0E3 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC25.83■■□□□ 1.73
Trim47Q8C0E3 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC25.83■■□□□ 1.73
Trim47Q8C0E3 Gm11175-201ENSMUST00000116172 543 ntBASIC25.82■■□□□ 1.72
Trim47Q8C0E3 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
Trim47Q8C0E3 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trim47Q8C0E3 Gm13889-201ENSMUST00000099689 1386 ntBASIC25.82■■□□□ 1.72
Trim47Q8C0E3 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Trim47Q8C0E3 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Trim47Q8C0E3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
Trim47Q8C0E3 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC25.8■■□□□ 1.72
Trim47Q8C0E3 Gm45364-201ENSMUST00000210883 159 ntBASIC25.8■■□□□ 1.72
Trim47Q8C0E3 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trim47Q8C0E3 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trim47Q8C0E3 AC154454.1-201ENSMUST00000225253 216 ntBASIC25.77■■□□□ 1.72
Trim47Q8C0E3 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC25.77■■□□□ 1.72
Trim47Q8C0E3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Trim47Q8C0E3 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trim47Q8C0E3 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trim47Q8C0E3 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC25.76■■□□□ 1.71
Trim47Q8C0E3 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trim47Q8C0E3 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Trim47Q8C0E3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC25.75■■□□□ 1.71
Trim47Q8C0E3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim47Q8C0E3 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim47Q8C0E3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim47Q8C0E3 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim47Q8C0E3 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim47Q8C0E3 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim47Q8C0E3 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim47Q8C0E3 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.72■■□□□ 1.71
Trim47Q8C0E3 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim47Q8C0E3 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Trim47Q8C0E3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim47Q8C0E3 Gm12818-201ENSMUST00000117562 1349 ntBASIC25.71■■□□□ 1.71
Trim47Q8C0E3 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim47Q8C0E3 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim47Q8C0E3 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Trim47Q8C0E3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim47Q8C0E3 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Trim47Q8C0E3 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
Trim47Q8C0E3 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Trim47Q8C0E3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC25.7■■□□□ 1.7
Trim47Q8C0E3 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Trim47Q8C0E3 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Trim47Q8C0E3 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim47Q8C0E3 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Trim47Q8C0E3 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim47Q8C0E3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
Trim47Q8C0E3 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
Trim47Q8C0E3 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim47Q8C0E3 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim47Q8C0E3 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim47Q8C0E3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
Trim47Q8C0E3 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim47Q8C0E3 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim47Q8C0E3 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
Trim47Q8C0E3 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim47Q8C0E3 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
Trim47Q8C0E3 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim47Q8C0E3 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Trim47Q8C0E3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Trim47Q8C0E3 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC25.65■■□□□ 1.7
Trim47Q8C0E3 Scarna2-201ENSMUST00000157560 414 ntBASIC25.65■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms