Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Snrnp40Q6PE01 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Snrnp40Q6PE01 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Snrnp40Q6PE01 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Snrnp40Q6PE01 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Snrnp40Q6PE01 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Snrnp40Q6PE01 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.91■□□□□ 0.94
Snrnp40Q6PE01 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Snrnp40Q6PE01 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Snrnp40Q6PE01 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Snrnp40Q6PE01 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Snrnp40Q6PE01 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Snrnp40Q6PE01 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Snrnp40Q6PE01 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Snrnp40Q6PE01 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Snrnp40Q6PE01 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Snrnp40Q6PE01 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Snrnp40Q6PE01 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.88■□□□□ 0.93
Snrnp40Q6PE01 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Snrnp40Q6PE01 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Snrnp40Q6PE01 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.87■□□□□ 0.93
Snrnp40Q6PE01 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.87■□□□□ 0.93
Snrnp40Q6PE01 Gm9812-201ENSMUST00000061934 968 ntBASIC20.86■□□□□ 0.93
Snrnp40Q6PE01 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Snrnp40Q6PE01 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Snrnp40Q6PE01 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.86■□□□□ 0.93
Snrnp40Q6PE01 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Snrnp40Q6PE01 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Snrnp40Q6PE01 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Snrnp40Q6PE01 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Snrnp40Q6PE01 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Snrnp40Q6PE01 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.84■□□□□ 0.93
Snrnp40Q6PE01 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Snrnp40Q6PE01 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Snrnp40Q6PE01 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Snrnp40Q6PE01 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Snrnp40Q6PE01 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.82■□□□□ 0.92
Snrnp40Q6PE01 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Snrnp40Q6PE01 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Snrnp40Q6PE01 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.81■□□□□ 0.92
Snrnp40Q6PE01 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Snrnp40Q6PE01 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Snrnp40Q6PE01 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Snrnp40Q6PE01 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC20.8■□□□□ 0.92
Snrnp40Q6PE01 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Snrnp40Q6PE01 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.8■□□□□ 0.92
Snrnp40Q6PE01 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Snrnp40Q6PE01 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.79■□□□□ 0.92
Snrnp40Q6PE01 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Snrnp40Q6PE01 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Snrnp40Q6PE01 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Snrnp40Q6PE01 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.78■□□□□ 0.92
Snrnp40Q6PE01 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Snrnp40Q6PE01 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
Snrnp40Q6PE01 Gm10420-201ENSMUST00000121713 882 ntBASIC20.78■□□□□ 0.92
Snrnp40Q6PE01 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Snrnp40Q6PE01 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Snrnp40Q6PE01 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.76■□□□□ 0.91
Snrnp40Q6PE01 Gm5812-201ENSMUST00000061073 957 ntBASIC20.76■□□□□ 0.91
Snrnp40Q6PE01 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Snrnp40Q6PE01 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.75■□□□□ 0.91
Snrnp40Q6PE01 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Snrnp40Q6PE01 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Snrnp40Q6PE01 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.75■□□□□ 0.91
Snrnp40Q6PE01 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Snrnp40Q6PE01 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Snrnp40Q6PE01 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Snrnp40Q6PE01 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Snrnp40Q6PE01 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Snrnp40Q6PE01 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Snrnp40Q6PE01 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Snrnp40Q6PE01 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Snrnp40Q6PE01 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Snrnp40Q6PE01 Gm5921-201ENSMUST00000075898 882 ntBASIC20.72■□□□□ 0.91
Snrnp40Q6PE01 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Snrnp40Q6PE01 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Snrnp40Q6PE01 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Snrnp40Q6PE01 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.91
Snrnp40Q6PE01 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.7■□□□□ 0.9
Snrnp40Q6PE01 Gm22567-201ENSMUST00000175542 342 ntBASIC20.7■□□□□ 0.9
Snrnp40Q6PE01 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Snrnp40Q6PE01 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Snrnp40Q6PE01 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Snrnp40Q6PE01 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Snrnp40Q6PE01 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.69■□□□□ 0.9
Snrnp40Q6PE01 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 607.6 ms