Protein–RNA interactions for Protein: Q6P9Z1

Smarcd3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd3Q6P9Z1 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smarcd3Q6P9Z1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smarcd3Q6P9Z1 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smarcd3Q6P9Z1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smarcd3Q6P9Z1 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smarcd3Q6P9Z1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smarcd3Q6P9Z1 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smarcd3Q6P9Z1 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Smarcd3Q6P9Z1 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Smarcd3Q6P9Z1 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smarcd3Q6P9Z1 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Smarcd3Q6P9Z1 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smarcd3Q6P9Z1 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarcd3Q6P9Z1 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smarcd3Q6P9Z1 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smarcd3Q6P9Z1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
Smarcd3Q6P9Z1 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smarcd3Q6P9Z1 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Particl-201ENSMUST00000205370 1560 ntBASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarcd3Q6P9Z1 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarcd3Q6P9Z1 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Smarcd3Q6P9Z1 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Smarcd3Q6P9Z1 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.07■□□□□ 0.96
Smarcd3Q6P9Z1 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Smarcd3Q6P9Z1 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Smarcd3Q6P9Z1 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarcd3Q6P9Z1 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarcd3Q6P9Z1 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarcd3Q6P9Z1 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarcd3Q6P9Z1 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.06■□□□□ 0.96
Smarcd3Q6P9Z1 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarcd3Q6P9Z1 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarcd3Q6P9Z1 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarcd3Q6P9Z1 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarcd3Q6P9Z1 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Smarcd3Q6P9Z1 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarcd3Q6P9Z1 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarcd3Q6P9Z1 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Smarcd3Q6P9Z1 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smarcd3Q6P9Z1 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.04■□□□□ 0.96
Smarcd3Q6P9Z1 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarcd3Q6P9Z1 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarcd3Q6P9Z1 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarcd3Q6P9Z1 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarcd3Q6P9Z1 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Smarcd3Q6P9Z1 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smarcd3Q6P9Z1 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Smarcd3Q6P9Z1 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarcd3Q6P9Z1 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarcd3Q6P9Z1 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Smarcd3Q6P9Z1 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Smarcd3Q6P9Z1 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarcd3Q6P9Z1 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarcd3Q6P9Z1 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarcd3Q6P9Z1 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21■□□□□ 0.95
Smarcd3Q6P9Z1 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarcd3Q6P9Z1 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarcd3Q6P9Z1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarcd3Q6P9Z1 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.98■□□□□ 0.95
Smarcd3Q6P9Z1 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Smarcd3Q6P9Z1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarcd3Q6P9Z1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smarcd3Q6P9Z1 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarcd3Q6P9Z1 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarcd3Q6P9Z1 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarcd3Q6P9Z1 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarcd3Q6P9Z1 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarcd3Q6P9Z1 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarcd3Q6P9Z1 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarcd3Q6P9Z1 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarcd3Q6P9Z1 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Smarcd3Q6P9Z1 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarcd3Q6P9Z1 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms